(en)The present disclosure relates to antibodies directed to vascular endothelial growth factor (“VEGF”) and uses of such antibodies, for example to treat diseases associated with the activity and/or overproduction of VEGF.

1.ApplicationNumber: US-201314648385-A
1.PublishNumber: US-9815893-B2
2.Date Publish: 20171114
3.Inventor: AKAMATSU YOSHIKO

4.Inventor Harmonized: AKAMATSU YOSHIKO(US)

5.Country: US
6.Claims:
(en)The present disclosure relates to antibodies directed to vascular endothelial growth factor (“VEGF”) and uses of such antibodies, for example to treat diseases associated with the activity and/or overproduction of VEGF.

7.Description:
(en)1. CROSS REFERENCE TO RELATED APPLICATIONS AND SEQUENCE LISTING
This application is a National Stage of International Application No. PCT/US13/72335, filed Nov. 27, 2013, which claims the benefit under 35 U.S.C. §119(e) of U.S. provisional application no. 61/732,256, filed Nov. 30, 2012, the contents all of which are incorporated herein in their entireties by reference thereto.
The instant application contains a Sequence Listing which has been submitted electronically and is hereby incorporated by reference in its entirety. Said ASCII copy, created on Nov. 26, 2013, is named 381493-808WO(126289)_SL.txt and is 162,206 bytes in size.


2. FIELD OF THE INVENTION
The present disclosure relates to anti-VEGF antibodies, pharmaceutical compositions comprising anti-VEGF antibodies, and therapeutic uses of such antibodies.
3. BACKGROUND
Angiogenesis has emerged as attractive therapeutic target due to its implication in a variety of pathological conditions, including tumor growth, proliferative retinopathies, age-related macular degeneration, rheumatoid arthritis (RA), and psoriasis (Folkman et al., 1992, J. Biol. Chem. 267:10931-10934). The first indication of specific molecular angiogenic factors was based on the observation of the strong neovascular response induced by transplanted tumors. It is now known that angiogenesis is essential for the growth of most primary tumors and their subsequent metastasis. Numerous molecules have since been associated with the positive regulation of angiogenesis, including transforming growth factor (TGF)-α, TGF-β, hepatocyte growth factor (HGF), tumor necrosis factor-α, angiogenin, interleukin (IL)-8, and vascular endothelial growth factor (VEGF, also referred to as VEGFA or vascular permeability factor (VPF)) (Ferrara et al., 2003, Nature Medicine 9:669-676).
The VEGF proteins are important signaling proteins involved in both normal embryonic vasculogenesis (the de novo formation of the embryonic circulatory system) and abnormal angiogenesis (the growth of blood vessels from pre-existing vasculature) (Ferrara et al., 1996, Nature 380:439-442; Dvorak et al., 1995, Am. J. Pathol. 146:1029-1039). VEGF is associated with solid tumors and hematologic malignancies, interocular neovascular syndromes, inflammation and brain edema, and pathology of the female reproductive tract (Ferrara et al., 2003, Nature Medicine 9:669-676). VEGF mRNA is over-expressed in many human tumors, including those of the lung, breast, gastrointestinal tract, kidney, pancreas, and ovary (Berkman et al., 1993, J. Clin. Invest. 91:153-159). Increases in VEGF in the aqueous and vitreous humor of the eyes have been associated with various retinopathies (Aiello et al., 1994, N. Engl. J. Med. 331:1480-1487). Age-related macular degeneration (AMD), a major cause of vision loss in the elderly is due to neovascularization and vascular leakage. The localization of VEGF in the choroidal neovascular membranes in patients affected by AMD has been shown (Lopez et al., 1996, Invest. Ophtalmo. Vis. Sci. 37:855-868).
The VEGF gene family includes the prototypical member VEGFA, as well as VEGFB, VEGFC, VEGFD, and placental growth factor (PLGF). The human VEGFA gene is organized as eight exons separated by seven introns. At least six different isoforms of VEGF exist, VEGF 121 , VEGF 145 , VEGF 162 , VEGF 165 , VEGF 165b , VEGF 183 , VEGF 189 , and VEGF 206 , where the subscripts refer to the number of amino acids remaining after signal cleavage. Native VEGF is a 45 kDa homodimeric heparin-binding glycoprotein (Ferrara et al., 2003, Nature Medicine 9:669-676). VEGF (specifically VEGFA) binds to two related receptor tyrosine kinases, VEGFR-1 (also referred to as Flt-1) and VEGFR-2 (also referred to as Flk-1 or kinase domain region (KDR) or CD309). Each receptor has seven extracellular and one transmembrane region. VEGF also binds to the neuropilins NRP1 (also referred to as vascular endothelial cell growth factor 165 receptor (VEGF165R) or CD304) and NRP2 also referred to as vascular endothelial cell growth factor 165 receptor 2 (VEGF165R2)).
Given its central role in regulating angiogenesis, VEGF provides an attractive target for therapeutic intervention. Indeed, a variety of therapeutic strategies aimed at blocking VEGF or its receptor signaling system are currently being developed for the treatment of neoplastic diseases. The anti-VEGF antibody bevacizumab, also referred to as rhuMAb VEGF or Avastin®, is a recombinant humanized anti-VEGF monoclonal antibody created and marketed by Genentech (Presta et al., 1997, Cancer Res. 57:4593-4599). In order to construct bevacizumab the complementarity-determining regions (CDRs) of the murine anti-VEGF monoclonal antibody A.4.6.1 were grafted onto human frameworks and an IgG constant region. Additional mutations outside the CDRs were then introduced into the molecule to improve binding, affording an antibody in which ˜93% of the amino acid sequence is derived from human IgG 1 and ˜7% of the sequence is derived from the murine antibody A.4.6.1. Bevacizumab has a molecular mass of about 149,000 Daltons and is glycosylated.
Ranibizumab is an affinity maturated Fab fragment derived from bevacizumab. Ranibizumab has a higher affinity for VEGF and also is smaller in size, allowing it to better penetrate the retina, and thus treat the ocular neovascularization associated with AMD (Lien and Lowman, In: Chernajovsky, 2008, Therapeutic Antibodies. Handbook of Experimental Pharmacology 181, Springer-Verlag, Berlin Heidelberg 131-150). Ranibizumab was developed and is marketed by Genentech under the trade name Lucentis®.
Treatment of cancer patients with a regimen that includes Avastin® can result in side effects including hypertension, proteinuria, thromboembolic events, bleeding and cardiac toxicity (Blowers & Hall, 2009, Br. J. Nurs. 18(6):351-6, 358). Also, despite being a humanized antibody, bevacizumab can elicit an immune response when administered to humans. Such an immune response may result in an immune complex-mediated clearance of the antibodies or fragments from the circulation, and make repeated administration unsuitable for therapy, thereby reducing the therapeutic benefit to the patient and limiting the re-administration of the antibody.
Accordingly, there is a need to provide improved anti-VEGF antibodies or fragments that overcome one or more of these problems, for example, by generating variants with higher affinity than bevacizumab that can be administered at reduced dosages, or variants with reduced immunogenicity and other side-effects as compared to bevacizumab.
Citation or identification of any reference in Section 2 or in any other section of this application shall not be construed as an admission that such reference is available as prior art to the present disclosure.
4. SUMMARY
The present disclosure relates to variants of the anti-VEGF antibody bevacizumab with improved characteristics, such as reduced immunogenicity and/or improved affinity towards VEGF as compared to bevacizumab or ranibizumab. Bevacizumab has three heavy chain CDRs, referred to herein (in amino- to carboxy-terminal order) as CDR-H1, CDR-H2, and CDR-H3, and three light chain CDRs, referred to herein (in amino- to carboxy-terminal order) as CDR-L1, CDR-L2, and CDR-L3. The sequences of the bevacizumab CDRs are shown in FIGS. 27AA and 27B , and their numbering is set forth in FIG. 1 (for heavy chain CDRs) and FIG. 2 (for light chain CDRs). A related antibody, ranibizumab, was generated by affinity maturation of bevacizumab. Ranibizumab has identical CDR-L1, CDR-L2, CDR-L3 and CDR-H2 sequences to bevacizumab, but varies in its CDR-H1 and CDR-H3 sequences from those of bevacizumab. The heavy and light chain sequences of ranibizumab are shown in FIG. 27C , and the CDRs are set forth in FIG. 27D .
The antibodies of the disclosure generally have CDRs with at least one amino acid substitution in at least one CDR as compared to bevacizumab and ranibizumab. The antibodies of the disclosure typically have heavy chain CDR sequences that impart one or more favorable characteristics as compared to the bevacizumab and/or ranibizumab CDR sequences, such as improvements in one or more of: on rate (ka), off rate (kd), affinity constant (KD), EC 50 for inhibition of VEGF binding to VEGF receptor 1 (“VEGFR1” or “VEGF-R1”), EC 50 for inhibition of VEGF binding to VEGF receptor 2 (“VEGFR2” or “VEGF-R2”), and EC 50 for inhibition of VEGF-mediated HUVEC proliferation. In some embodiments, the improvements are determined in the context of a monospecific IgG antibody. In yet other embodiments, the improvements are determined in the context of a multi-specific antibody, such as the DVD-Ig molecules of FIG. 23 . In various embodiments, one or more of these characteristics is improved by at least 25%, by at least 50%, or by at least 100%, and optionally is improved by up to 150%, up to 200%, up to 300% or even more.
The anti-VEGF antibodies of the disclosure typically have CDRs with at least one amino acid substitution as compared to the CDRs of bevacizumab and/or ranibizumab. In various embodiments, the antibodies have CDRs with 2, 3, or even 4 or more substitutions as compared to the CDRs of bevacizumab and/or ranibizumab. In certain aspects, the anti-VEGF antibodies have at least one amino acid substitution in CDR-H1 and/or at least one amino acid substitution in CDR-H3, as compared to the CDRs of bevacizumab and/or ranibizumab. Moreover, the anti-VEGF antibodies of the disclosure can have VH and/or VL sequences that are related to the VH and/or VL sequences of bevacizumab and/or ranibizumab, i.e., have framework sequences that are related to the framework sequences of bevacizumab and/or ranibizumab. In certain aspects, the framework sequences can each have up to 1, up to 2, or up to 3 amino acids substitution each. In other aspects, the framework sequences are identical to the framework sequences of bevacizumab and/or ranibizumab. Accordingly, in certain aspects, the anti-VEGF antibodies of the disclosure can have, other than up to 17 CDR substitutions (and in certain embodiments up to 10, up to 9, up to 8, up to 7, up to 6, up to 5, or up to 4 CDR substitutions), (a) a VH sequence corresponding to the VH of bevacizumab and a VL sequence corresponding to the VL of bevacizumab; (b) a VH sequence corresponding to the VH of ranibizumab and a VL sequence corresponding to the VL of ranibizumab; (c) a VH sequence corresponding to the VH of bevacizumab and a VL sequence corresponding to the VL of ranibizumab; or (d) a VH sequence corresponding to the VH of ranibizumab and a VL sequence corresponding to the VL of bevacizumab.
In certain aspects, the antibodies include at least one CDR substitution or combination of CDR substitutions set forth in any one of FIGS. 21-22 , FIG. 24 and FIG. 26 , optionally in combination with one or more additional CDR substitutions or combinations of CDR substitutions from one or more of FIGS. 6, 7, 8, 9, 10, 11, 12A to 12I, 13-16, and 21-26 . In a specific embodiment, one or more substitutions from FIG. 6 are included.
In certain aspects, the anti-VEGF antibodies include one, two, three, four or all five of (a) T or G or R or Y at Kabat 28 in CDR-H1; (b) K or N or R or W at Kabat 30 in CDR-H1; (c) F or H or L or W or Y at Kabat 31 in CDR-H1; (d) A or D or E or F or P or Y at Kabat 97 in CDR-H3; and (e) A or G or Q or T at Kabat 100a in CDR-H3. The correspondence between the Kabat numbering and CDR positions is set forth in FIG. 1 for the heavy chain CDRs and in FIG. 2 for the light chain CDRs.
In specific embodiments, the anti-VEGF antibodies include one, two, or all three of: (a) G at Kabat 28 in CDR-H1; (b) Y at Kabat 31 in CDR-H1; and (c) A at Kabat 100a in CDR-H3. In other specific embodiments, the anti-VEGF antibodies include one, two, or all three of: (a) G at Kabat 28 in CDR-H1; (b) Y at Kabat 31 in CDR-H1; and (c) Q at Kabat 100a in CDR-H3. In yet other specific embodiments, the anti-VEGF antibodies include one, two, or all three of: (a) G at Kabat 28 in CDR-H1; (b) Y at Kabat 31 in CDR-H1; and (c) Tat Kabat 100a in CDR-H3.
In other specific embodiments, the anti-VEGF antibodies include one, two, or all three of: (a) T at Kabat 28 in CDR-H1; (b) Y at Kabat 31 in CDR-H1; and (c) A at Kabat 100a in CDR-H3. In other specific embodiments, the anti-VEGF antibodies include one, two, or all three of: (a) Tat Kabat 28 in CDR-H1; (b) Y at Kabat 31 in CDR-H1; and (c) Q at Kabat 100a in CDR-H3. In yet other specific embodiments, the anti-VEGF antibodies include one, two, or all three of: (a) T at Kabat 28 in CDR-H1; (b) Y at Kabat 31 in CDR-H1; and (c) T at Kabat 100a in CDR-H3.
In other specific embodiments, the anti-VEGF antibodies include at least 2 of the amino acid substitutions present in the combinatorial variants designated C1 through C13 in FIG. 24 . In certain specific embodiments, the anti-VEGF antibodies include all three of the substitutions present in C9, C10, C12 or C13, or three of the substitutions present in any one of C1-C8 and C11. In yet other embodiments, the anti-VEGF antibodies include all four of the substitutions present in any one of C5-C8 and C11, or four of the substitutions present in any one of C1-C4. In yet other embodiments, the anti-VEGF antibodies include all five of the substitutions present in any one of C1-C4. In each of the forgoing embodiments, Kabat 100a can be substituted with a T.
In certain aspects, the anti-VEGF antibodies include, optionally in addition to the CDR substitutions described above, at least one substitution as compared to bevacizumab or ranibizumab selected from T30K in CDR-H1; T30N in CDR-H1; N31H in CDR-H1; N31L in CDR-H1; N31W in CDR-H1; N31Y in CDR-H1; H97F in CDR-H3; S100aQ in CDR-H3; and S100aT in CDR-H3. In certain aspects, the anti-VEGF antibodies include one or more additional mutations or combinations of mutations selected from one or more of FIGS. 6, 7, 8, 9, 10, 11, 12A to 12I, 13-16, and 21-26 .
In other aspects, the anti-VEGF antibodies include, optionally in addition to the CDR substitutions described above, at least one substitution as compared to bevacizumab or ranibizumab selected from N31F in CDR-H1; K64S in CDR-H2; K64Q in CDR-H2; Y53F in CDR-H2; H97E in CDR-H3; H97D in CDR-H3; H97P in CDR-H3; Y98F in CDR-H3; Y99E in CDR-H3; Y99D in CDR-H3; S100aG in CDR-H3, and T51A in CDR-L2. In other aspects, the anti-VEGF antibodies include at least one substitution selected from FIGS. 8 and 9 . Additional mutations that can be incorporated into the improved affinity variant antibodies can be candidate deimmunizing substitutions, such as those described in FIG. 6 , as well as other mutations, e.g., substitutions, that do not destroy the ability of the antibodies to bind to VEGF, including but not limited to the mutations described in FIG. 10 and 11 , or known mutations, such as the mutations described in FIGS. 12A to 12I and 13 . Yet further mutations that can be incorporated include but are not limited to the mutations described in FIGS. 14-16 and 21-26 .
In specific embodiments, the anti-VEGF antibodies of the disclosure include, optionally in addition to the CDR substitutions described above, a combination of substitutions selected from FIG. 7 , and optionally one or more additional mutations, e.g., candidate deimmunizing substitutions, such as those described in FIG. 6 , as well as other mutations, e.g., substitutions, that do not destroy the ability of the antibodies to bind to VEGF, including but not limited to the mutations described in FIGS. 10 and 11 , or known mutations, such as the mutations described in FIGS. 12A to 12I and 13 . Yet further mutations that can be incorporated into the anti-VEGF antibodies of the disclosure include but are not limited to the mutations described in FIGS. 14-16 and 21-26 .
In other embodiments, the anti-VEGF antibodies of the disclosure include one, optionally in addition to the CDR substitutions described above, or more of the following CDR substitutions: K64S (CDR-H2), K64Q (CDR-H2), Y53F and K64Q (CDR-H2), H97E and Y98F (CDR-H3), or T51A (CDR-L2). The anti-VEGF antibodies can also optionally include one or more additional mutations or combinations of mutations selected from one or more of FIGS. 6, 7, 8, 9, 10, 11, 12A to 12I , or 13 - 16 and 21 - 26 .
Further CDR substitutions can include N31F (CDR-H1), H97E (CDR-H3), H97D (CDR-H3), H97P (CDR-H3), Y99E (CDR-H3), Y99D (CDR-H3), S100aG (CDR-H3) wherein position 3 in CDR-H3 optionally is not tyrosine, T28P, N31F, N31G and N31M (CDR-H1), H97A, H97Q, H97S, H97T, S100aD, S100aE, and S100Av (CDR-H3), T30W, T30R or T30Q (CDR-H1), Y53F, T58F, A61G, A61K, A61R, A61H, A61Y, K64G, K64E, R65L, R65T, R65A, R65E, and R65D (CDR-H2), and Y98F and Y100eF (CDR-H3). The CDRs optionally contain one or more additional mutations or combinations of mutations selected from one or more of FIGS. 6, 7, 8, 9, 10, 11, 12A to 12I 13 and 21 - 26 .
Yet further substitutions can include heavy chain CDR substitutions including a combination of substitutions selected from: (a) N31F in CDR-H1, H97D in CDR-H3, Y99D in CDR-H3, and S100aG in CDR-H3; (b) N31F in CDR-H1, H97P in CDR-H3, Y99D in CDR-H3, and S100aG in CDR-H3; (c) N31F in CDR-H1, H97P in CDR-H3, and Y99E in CDR-H3; (d) N31F in CDR-H1, H97E in CDR-H3, and Y99E in CDR-H3; (e) N31F in CDR-H1, H97D in CDR-H3, and Y99E in CDR-H3; (f) N31F in CDR-H1, H97E in CDR-H3, Y99D in CDR-H3, and S100aG in CDR-H3; (g) N31F in CDR-H1, Y99D in CDR-H3, and S100aG in CDR-H3; (h) N31F in CDR-H1, H97P in CDR-H3, and Y99D in CDR-H3; (i) N31F in CDR-H1, H97D in CDR-H3, and S100aG in CDR-H3; (j) N31F in CDR-H1 and S100aG in CDR-H3; or (k) N31F in CDR-H1, H97P in CDR-H3, and S100aG in CDR-H3. Further optional substitutions can include one or more additional mutations or combinations of mutations selected from one or more of FIGS. 6, 7, 8, 9, 10, 11, 12A to 12I, 13, and 21-26 .
Still further heavy chain substitutions can include at least one substitution selected from A61F in CDR-H2, A61E in CDR-H2, A61D in CDR-H2, D62L in CDR-H2, D62G in CDR-H2, D62Q in CDR-H2, D62T in CDR-H2, D62K in CDR-H2, D62R in CDR-H2, D62E in CDR-H2, D62H in CDR-H2, K64S in CDR-H2, K64V in CDR-H2, K64Q in CDR-H2, R65V in CDR-H2, R65F in CDR-H2, R65H in CDR-H2, R65N in CDR-H2, R65S in CDR-H2, R65Q in CDR-H2, R65K in CDR-H2, R65I in CDR-H2, and Y98H in CDR-H3. Optionally, one or more additional mutations or combinations of mutations can be included as selected from one or more of FIGS. 7, 8, 9, 10, 11, 12A to 12I, 13 and 21-26 .
In certain aspects, the antibodies of the disclosure have V H and V L sequences having at least 80% sequence identity (and in certain embodiments, at least 85%, at least 90%, at least 95%, at least 98%, or at least 99% sequence identity) to the V H and V L sequences of bevacizumab or ranibizumab, and include at least one amino acid substitution in at least one CDR as compared to bevacizumab or ranibizumab. In other aspects, the antibodies of the disclosure have V H and V L sequences having at least 80% sequence identity (and in certain embodiments, at least 85%, at least 90%, at least 95%, at least 98%, or at least 99% sequence identity) to the V H and V L sequences of bevacizumab or ranibizumab, and include at least one amino acid substitution in at least one framework region as compared to bevacizumab or ranibizumab. In specific embodiments, the percentage sequence identity for the heavy chain and the light chain compared to the V H and V L sequences of bevacizumab or ranibizumab is independently selected from at least 80%, at least 85%, at least 90%, at least 95% sequence identity, or at least 99% sequence identity. In certain aspects, the antibodies of the disclosure have V H and/or V L sequences having at least 95%, at least 98% or at least 99% sequence identity to the V H and/or V L sequences of bevacizumab or ranibizumab.
In certain aspects, the antibodies of the disclosure have up to 17 amino acid substitutions in their CDRs as compared to bevacizumab or ranibizumab. Variant antibodies with 17 amino acid substitutions that maintain their target binding capability have been generated by Bostrom et al., 2009, Science 323:1610-14.
In specific embodiments, an anti-VEGF antibody of the disclosure has, independently:
up to one, up to two, up to three, up to four, up to five, up to six, up to seven, up to eight, up to nine or up to ten CDR-H1 substitutions as compared to the corresponding CDR of bevacizumab or of ranibizumab; up to one, up to two, up to three, up to four, up to five, up to six, up to seven, up to eight, up to nine, up to ten, up to eleven, up to twelve, up to thirteen, up to fourteen, up to fifteen, up to sixteen or up to seventeen CDR-H2 substitutions as compared to the corresponding CDR of bevacizumab or of ranibizumab; up to one, up to two, up to three, up to four, up to five, up to six, up to seven, up to eight, up to nine, up to ten, up to eleven, up to twelve, up to thirteen or up to fourteen CDR-H3 substitutions as compared to the corresponding CDR of bevacizumab or of ranibizumab; up to one, up to two, up to three, up to four, up to five, up to six, up to seven, up to eight, up to nine, up to ten or up to eleven CDR-L1 substitutions as compared to the corresponding CDR of bevacizumab or of ranibizumab; up to one, up to two, up to three, up to four, up to five, up to six or up to seven CDR-L2 substitutions as compared to the corresponding CDR of bevacizumab or of ranibizumab; and up to one, up to two, up to three, up to four, up to five, up to six, up to seven, up to eight or up to nine CDR-L3 substitutions as compared to the corresponding CDR of bevacizumab or of ranibizumab.

In some embodiments, any individual mutation does not decrease affinity by greater than twofold and preferably maintains or improves affinity as compared to the corresponding amino acid of bevacizumab or ranibizumab.
In certain aspects, the anti-VEGF antibody is a multi-specific antibody, comprising a VEGF binding portion and a second target binding portion (which can be VEGF or a different target). A multi-specific antibody of the disclosure can include Fc regions with mutations that enforce correct chain association.
In some aspects, the multi-specific antibody has affinity for VEGF and DLL4.
A preferred type of multi-specific antibody is a dual-variable-domain (“DVD”) immunoglobulin (“DVD-Ig”). An exemplary DVD-Ig heavy chain variable region into which the heavy chain substitutions disclosed herein can be incorporated is set forth as SEQ ID NO:413, and an exemplary DVD-Ig heavy chain into which the heavy chain substitutions disclosed herein can be incorporated is set forth as SEQ ID NO:415. Exemplary DVD-Ig light chain variable regions into which the light chain substitutions disclosed herein can be incorporated are set forth as SEQ ID NO:414 and SEQ ID NO:434, and exemplary DVD-Ig light chains into which the heavy chain substitutions disclosed herein can be incorporated are set forth as SEQ ID NO:435 and SEQ ID NO:416. In one embodiment, the anti-VEGF DVD-Ig into which the amino acid substitutions disclosed herein can be introduced is an immunoglobulin having a heavy chain variable region of SEQ ID NO:413 and a light chain variable region of SEQ ID NO: 414 or SEQ ID NO:434. In another embodiment, anti-VEGF DVD-Ig into which the amino acid substitutions disclosed herein can be introduced is an immunoglobulin having a heavy chain of SEQ ID NO:415 and a light chain of SEQ ID NO:416 or SEQ ID NO:435.
In other embodiments, the anti-VEGF antibodies or fragments thereof can be components of multi-specific antibodies that are based on full immunoglobulin molecules and include Fc regions, for example IgG Fc regions. Such structures can include, but not limited to, IgG-Fv, IgG-(scFv)2, DVD-Ig, (scFv)2-(scFv)2-Fc and (scFv)2-Fc-(scFv)2. In other aspects, the anti-VEGF fragments thereof can be components of multi-specific molecules without Fc regions, based on fragments of IgG or DVD or scFv. Exemplary multi-specific molecules that lack Fc regions and into which the anti-VEGF antibodies or antibody fragments can be incorporated, such as scFv dimers (diabodies), trimers (triabodies) and tetramers (tetrabodies), Fab dimers (conjugates by adhesive polypeptide or protein domains) and Fab trimers (chemically conjugated).
While the substitutions described above use bevacizumab CDR positions as a point of reference, they can also be incorporated into ranibizumab CDR sequences even if ranibizumab differs in sequence from bevacizumab at certain positions. By way of example, the variants of the disclosure can include “T28P” in CDR-H1, however Kabat 28 in ranibizumab is not T (as in bevacizumab) but D. Nonetheless, the proline substitution can also be incorporated into Kabat 28 in CDR-H1 of ranibizumab.
Exemplary anti-VEGF antibodies of the disclosure incorporating one or more of the above features are set forth in embodiments 1-72 and 84-173 in Section 13 below.
The antibodies of the disclosure can be conjugated to drugs to form antibody-drug conjugates (“ADCs”). Exemplary ADCs are set forth in embodiments 73 and 174 in Section 13, and exemplary agents to which they can be conjugated are set forth in Section 6.6.
The present disclosure further provides pharmaceutical compositions comprising modified anti-VEGF antibodies. Exemplary pharmaceutical compositions are set forth in embodiments 74 and 175 in Section 13, and exemplary reagents and formulations are set forth in Section 6.9. In some aspects, the pharmaceutical compositions have increased affinity to VEGF and/or reduced immunogenicity as compared to bevacizumab or ranibizumab.
Nucleic acids comprising nucleotide sequences encoding the anti-VEGF antibodies of the disclosure are provided herein (see, e.g., exemplary embodiments 75 and 176 in Section 13), as are vectors comprising the nucleic acids (see, e.g., exemplary embodiments 76 and 177 in Section 13). Additionally, recombinant cells (see, e.g., exemplary embodiments 77-80 and 178-181 in Section 13) are provided herein. Such recombinant cells include, for example, prokaryotic and eukaryotic host cells transformed with a vector comprising a nucleotide sequence encoding an anti-VEGF antibody, as well as eukaryotic (such as mammalian) host cells engineered to express the nucleotide sequences. Methods of producing anti-VEGF antibodies by culturing host cells are also provided (see, e.g., exemplary embodiments 81 and 182 in Section 13).
The anti-VEGF antibodies of the disclosure are useful in the treatment of cancers, retinal conditions and immune disorders (see, e.g., embodiments 82-83 and 183-193 in Section 13). Exemplary cancers include but are not limited to colon carcinoma, rectal carcinoma, non-small cell lung cancer, and breast cancer. Exemplary retinal conditions include but are not limited to age-related macular degeneration (“AMD”), macular edema following retinal vein occlusion (“RVO”), and diabetic macular edema (“DME”). Exemplary immune disorders include but are not limited to rheumatoid arthritis, psoriasis and Grave's Disease.
In certain aspects, the anti-VEGF antibodies of the disclosure can be used in reduced dosages as compared to bevacizumab or ranibizumab, e.g., at least 10%, at least 20%, at least 30%, at least 40%, at least 50%, at least 60%, at least 70%, at least 80% or at least 90% lower dosages.
It should be noted that the indefinite articles “a” and “an” and the definite article “the” are used in the present application, as is common in patent applications, to mean one or more unless the context clearly dictates otherwise. Further, the term “or” is used in the present application, as is common in patent applications, to mean the disjunctive “or” or the conjunctive “and.”
All publications mentioned in this specification are herein incorporated by reference. Any discussion of documents, acts, materials, devices, articles or the like that has been included in this specification is solely for the purpose of providing a context for the present disclosure. It is not to be taken as an admission that any or all of these matters form part of the prior art base or were common general knowledge in the field relevant to the present disclosure as it existed anywhere before the priority date of this application.
The features and advantages of the disclosure will become further apparent from the following detailed description of embodiments thereof.



5. BRIEF DESCRIPTION OF THE FIGURES
FIG. 1 shows the numbering of the amino acids in the heavy chain CDRs of bevacizumab. CDRs 1-3 are disclosed as SEQ ID NOS:3-5, respectively.
FIG. 2 shows the numbering of the amino acids in the light chain CDRs of bevacizumab. CDRs 1-3 are disclosed as SEQ ID NOS:6-8, respectively.
FIG. 3 shows bevacizumab VL peptides that were tested for immunogenicity.
FIG. 4 shows bevacizumab VH peptides that were tested for immunogenicity.
FIG. 5 shows identified CD4 + T cell epitope regions in bevacizumab. CDR regions are underlined.
FIG. 6 shows candidate mutations in CDR-H2 and CDR-H3 for lowering immunogenicity of bevacizumab. The numbering of the amino acids in FIG. 6 corresponds to Kabat numbering in the bevacizumab heavy chain.
FIG. 7 shows heavy chain CDR amino acid substitutions in bevacizumab resulting improved K D as analyzed by surface plasmon resonance. Δ k on refers to fold improvement in k on (mutant/WT). Δ k off refers to fold improvement in k off (WT/mutant). Δ K D refers to the improvement in the K D in the mutant relative to wild type. The numbering of the amino acids in FIG. 7 corresponds to Kabat numbering in the bevacizumab heavy chain.
FIG. 8 shows mutations in the bevacizumab heavy chain CDRs that preliminary binding studies indicate increase the affinity towards VEGF (data not shown). The numbering of the amino acids in FIG. 8 corresponds to Kabat numbering in the bevacizumab heavy chain.
FIG. 9 shows mutations in the bevacizumab heavy chain CDRs that preliminary studies indicate increase the affinity towards VEGF (data not shown). The numbering of the amino acids in FIG. 9 corresponds to Kabat numbering in the bevacizumab heavy chain.
FIG. 10 shows mutations in the bevacizumab heavy chain CDRs that do not impact binding and can be incorporated into the antibodies of the disclosure. The numbering of the amino acids in FIG. 10 corresponds to Kabat numbering in the bevacizumab heavy chain.
FIG. 11 shows mutations in the bevacizumab light chain CDRs that do not impact binding and can be incorporated into the antibodies of the disclosure. The numbering of the amino acids in FIG. 11 corresponds to Kabat numbering in the bevacizumab light chain.
FIGS. 12A to 12I show known mutations in bevacizumab heavy chain CDRs that can be incorporated into the antibodies of the disclosure. Each row in FIGS. 12A to 12I to includes a distinct known variant. For each variant, the known CDR sequences are shaded. The sequence identifiers for each variant identified in FIGS. 12A to 12I are set forth in FIGS. 20A to 20I , respectively. The CDR-H1 column provides a partial sequence of CDR-H1. The final asparagine of CDR-H1 is not shown. This partial sequence corresponds to SEQ ID NO:411. Although known mutations in CDR-H1 are shown in the context of this partial sequence, it is noted that the mutations exist in the context of the full length CDR.
FIG. 13 shows known mutations in bevacizumab light chain CDRs that can be incorporated into the antibodies of the disclosure. Each row in FIG. 13 includes a distinct known variant. For each variant, the known CDR sequences are shaded. The sequence identifiers for each variant identified in FIG. 13 is set forth in FIG. 20J .
FIG. 14 shows bevacizumab CDR2 VH peptides that were tested for immunogenicity, wherein residues unchanged from SEQ ID NO:62 are indicated by a blank box. CD4+ T cell assay results are also provided.
FIG. 15 shows bevacizumab CDR3 VH peptides that were tested for immunogenicity, wherein residues unchanged from SEQ ID NO:74 are indicated by a blank box. CD4+ T cell assay results are also provided.
FIG. 16 shows bevacizumab CDR2 VL peptides that were tested for immunogenicity, wherein residues unchanged from SEQ ID NO:25 are indicated by a blank box. CD4+ T cell assay results are also provided.
FIG. 17 shows selected epitope modifications for the three CD4+ T cell epitopes in bevacizumab.
FIG. 18 shows single variable region mutants and their associated mean fluorescence intensity (MFI) value.
FIG. 19 shows combined variable region mutants and their associated EC 50 .
FIGS. 20A to 20J show the SEQ ID NOS, where known, corresponding to the CDRs of the bevacizumab variants listed in FIGS. 12A to 12I and FIG. 13 , respectively. N/A indicates an unknown CDR sequence.
FIG. 21 shows binding data for anti-VEGF IgG, SS DLL4-VEGF DVD immunoglobulin (Ig), and SL DLL4-VEGF DVD immunoglobulin (Ig), each comprising mutant bevacizumab heavy chain CDRs. The numbering of the amino acids in FIG. 21 corresponds to Kabat numbering in the bevacizumab heavy chain.
FIG. 22 shows mutations in bevacizumab CDR-H1, CDR-H2 and CDR-H3 resulting in similar or reduced VEGF affinity in a SS DLL4-VEGF DVD-Ig as compared to a SS DLL4-VEGF DVD-Ig without the mutation. The numbering of the amino acids in FIG. 22 corresponds to Kabat numbering in the bevacizumab heavy chain.
FIG. 23 shows exemplary heavy and light chain anti-VEGF DVD-Ig heavy chain variable regions and exemplary anti-VEGF DVD-Ig heavy and light chains into which the amino acid substitutions disclosed herein can be introduced. CDRs are shown in bold, linker sequences are shown underlined, and constant regions are shown in italics. An exemplary heavy chain variable region, with a short linker, is shown as SEQ ID NO:413. Exemplary light chain variable regions, with short and long linkers, are shown as SEQ ID NO:414 and SEQ ID NO:434, respectively. An exemplary heavy chain, with a short linker, is shown as SEQ ID NO:415. Exemplary light chains, with short and long linkers, are shown as SEQ ID NO:435 and SEQ ID NO:416, respectively.
FIG. 24 summarizes expression and affinity data and improvements in inhibition of binding of VEGF to its receptors and in inhibition of VEGF-induced HUVEC proliferation for variants having the combinations of substitutions designated C1 through C13 as compared to the bevacizumab V H (“WT” in FIG. 24 ) and the ranibizumab V H (“Luc” in FIG. 24 ).
FIG. 25 summarizes comparative affinity data for the bevacizumab VH (“WT” in FIG. 25 ) or the ranibizumab V H (“Luc” in FIG. 25 ) in IgG and DVD-Ig formats. Both the “WT” and “Luc” controls had the bevacizumab V L sequence (SEQ ID NO:2). The DVD-Ig formats were DLL4-VEGF DVD-Ig molecules in which the VEGF V H sequences were in the inner domain, with an SL version and an SS version.
FIG. 26 summarizes affinity data for variants having the combinations of substitutions designated C5, C6, C9, C10, C11, C12 and C13 in the context of a DLL4-VEGF DVD-Ig containing SL linkers and in which the VEGF VH sequences were in the inner domain. Controls for this assay were DVD-Ig molecules containing CDR sequences of bevacizumab (“WT” in FIG. 26 ) or ranibizumab (“Luc” in FIG. 26 ). Results from 2 different assays, separated by a blank line, are shown.
FIGS. 27A to 27D . FIG. 27A shows the amino acid sequences of the bevacizumab heavy and light chain variable regions, SEQ ID NO:1 and SEQ ID NO:2, respectively, with CDR regions in bold text. FIG. 27B shows the CDR sequences and corresponding sequence identifiers of bevacizumab. FIG. 27C -shows the amino acid sequences of the ranibizumab heavy and light chains, including the constant regions, SEQ ID NO:9 and SEQ ID NO:10, respectively, with CDR regions in bold, underlined text. The heavy chain variable region ends with the sequence “VTVSS” and the heavy chain constant region begins with the sequence “ASTKGP”. The light chain variable region ends with the sequence “VEIKP” and the light chain constant region begins with the sequence “TVAAPS”. FIG. 27D shows the CDR sequences and corresponding sequence identifiers of ranibizumab.
FIGS. 28A to 28B show bevacizumab VL peptide responses. FIG. 28A shows percent of donor responses to each VL peptide with a stimulation index of 2.95 or greater. N=99 donors. FIG. 28B shows the average stimulation index for all 99 donors for each peptide plus or minus standard error.
FIGS. 29A to 29B show bevacizumab VH peptide responses. FIG. 29A shows percent of donor responses to each VH peptide with a stimulation index of 2.95 or greater. N=99 donors. FIG. 29B shows the average stimulation index for all 99 donors for each peptide plus or minus standard error.
FIGS. 30A to 30C show CD4+ T cell responses to mutant bevacizumab epitope peptides. Average responses to the unmodified parent epitope sequences are indicated with open marks. Large circles indicate selected changes referred to in FIG. 17 . FIG. 30A is directed to VH CDR2 peptides; FIG. 30B is directed to VH CDR3 peptides; and FIG. 30C is directed to VL CDR2 peptides.
FIG. 31 is a schematic of an exemplary DLL4-VEGF DVD-Ig in which the anti-DLL4 variable domain is on the outside and the anti-VEGF variable domain is on the inside of the molecule. Intermolecular disulfide bonds are not shown but included in the actual protein.



6. DETAILED DESCRIPTION
6.1 Anti-VEGF Antibodies
The present disclosure provides anti-VEGF antibodies. Unless indicated otherwise, the term “antibody” (Ab) refers to an immunoglobulin molecule that specifically binds to, or is immunologically reactive with, a particular antigen, and includes polyclonal, monoclonal, genetically engineered and otherwise modified forms of antibodies, including but not limited to chimeric antibodies, humanized antibodies, heteroconjugate antibodies (e.g., bi- tri- and quad-specific antibodies, diabodies, triabodies, and tetrabodies), and antigen binding fragments of antibodies, including e.g., Fab′, F(ab′) 2 , Fab, Fv, rIgG, and scFv fragments. Moreover, unless otherwise indicated, the term “monoclonal antibody” (mAb) is meant to include both intact molecules, as well as, antibody fragments (such as, for example, Fab and F(ab′) 2 fragments) which are capable of specifically binding to a protein. Fab and F(ab′) 2 fragments lack the Fc fragment of intact antibody, clear more rapidly from the circulation of the animal, and may have less non-specific tissue binding than an intact antibody (Wahl et al., 1983, J. Nucl. Med. 24:316).
The term “scFv” refers to a single chain Fv antibody in which the variable domains of the heavy chain and the light chain from a traditional antibody have been joined to form one chain.
References to “VH” refer to the variable region of an immunoglobulin heavy chain of an antibody, including the heavy chain of an Fv, scFv, or Fab. References to “VL” refer to the variable region of an immunoglobulin light chain, including the light chain of an Fv, scFv, dsFv or Fab. Antibodies (Abs) and immunoglobulins (Igs) are glycoproteins having the same structural characteristics. While antibodies exhibit binding specificity to a specific target, immunoglobulins include both antibodies and other antibody-like molecules which lack target specificity. Native antibodies and immunoglobulins are usually heterotetrameric glycoproteins of about 150,000 Daltons, composed of two identical light (L) chains and two identical heavy (H) chains. Each heavy chain has at the amino terminus a variable domain (VH) followed by a number of constant domains. Each light chain has a variable domain at the amino terminus (VL) and a constant domain at the carboxy terminus.
The anti-VEGF antibodies of the disclosure can be diabodies, triabodies or tetrabodies. Diabodies are bivalent antibodies comprising two polypeptide chains, wherein each polypeptide chain comprises V H and V L domains joined by a linker that is too short to allow for pairing between two domains on the same chain, thus allowing each domain to pair with a complementary domain on another polypeptide chain (Holliger et al., 1993, Proc. Natl. Acad. Sci. USA 90:6444-48, and Poljak et al., 1994, Structure 2:1121-23). If the two polypeptide chains of a diabody are identical, then a diabody resulting from their pairing will have two identical antigen binding sites. Polypeptide chains having different sequences can be used to make a diabody with two different antigen binding sites. Similarly, tribodies and tetrabodies are antibodies comprising three and four polypeptide chains, respectively, and forming three and four antigen binding sites, respectively, which can be the same or different.
The anti-VEGF antibodies of the disclosure bind to human VEGF and inhibit VEGF receptor activity in a cell.
The anti-VEGF antibodies of the disclosure contain complementarity determining regions (CDRs) that are related in sequence to the CDRs of the antibody bevacizumab (also known as Avastin®) and/or ranibizumab (also known as Lucentis®).
CDRs are also known as hypervariable regions both in the light chain and the heavy chain variable domains. The more highly conserved portions of variable domains are called the framework (FR). As is known in the art, the amino acid position/boundary delineating a hypervariable region of an antibody can vary, depending on the context and the various definitions known in the art. Some positions within a variable domain may be viewed as hybrid hypervariable positions in that these positions can be deemed to be within a hypervariable region under one set of criteria while being deemed to be outside a hypervariable region under a different set of criteria. One or more of these positions can also be found in extended hypervariable regions. The disclosure provides antibodies comprising modifications in these hybrid hypervariable positions. The variable domains of native heavy and light chains each comprise four FR regions, largely by adopting a β-sheet configuration, connected by three CDRs, which form loops connecting, and in some cases forming part of, the β-sheet structure. The CDRs in each chain are held together in close proximity by the FR regions in the order FR1-CDR1-FR2-CDR2-FR3-CDR3-FR4 and, with the CDRs from the other chain, contribute to the formation of the target binding site of antibodies (see Kabat et al., Sequences of Proteins of Immunological Interest (National Institute of Health, Bethesda, Md. 1987). As used herein, numbering of immunoglobulin amino acid residues is done according to the immunoglobulin amino acid residue numbering system of Kabat et al., unless otherwise indicated.
The sequences of the heavy and light chain variable regions of bevacizumab are represented by SEQ ID NO:1 and SEQ ID NO:2, respectively. The sequences of the heavy and light chain variable regions are also depicted in FIG. 27A . The sequences of the CDRs of bevacizumab, and their corresponding identifiers, are presented in FIG. 27B . Any nucleotide sequences encoding SEQ ID NO:1 or SEQ ID NO:2 can be used in the compositions and methods of the present disclosure.
The sequences of the heavy and light chains of ranibizumab are represented by SEQ ID NO:9 and SEQ ID NO:10, respectively. The sequences of the heavy and light chains are also depicted in FIG. 27C . The heavy chain variable region ends with the sequence “VTVSS” and the heavy chain constant region begins with the sequence “ASTKGP”. The light chain variable region ends with the sequence “VEIKP” and the light chain constant region begins with the sequence “TVAAPS”. The sequences of the CDRs of ranibizumab, and their corresponding identifiers, are presented in FIG. 27D . Any nucleotide sequences encoding SEQ ID NO:9 or SEQ ID NO:10 or the variable regions thereof can be used in the compositions and methods of the present disclosure.
The present disclosure further provides anti-VEGF antibody fragments comprising CDR sequences that are related to the CDR sequences of bevacizumab and ranibizumab. The term “antibody fragment” refers to a portion of a full-length antibody, generally the target binding or variable region. Examples of antibody fragments include Fab, Fab′, F(ab′) 2 and Fv fragments. An “Fv” fragment is the minimum antibody fragment which contains a complete target recognition and binding site. This region consists of a dimer of one heavy and one light chain variable domain in a tight, non-covalent association (VH-VL dimer). It is in this configuration that the three CDRs of each variable domain interact to define a target binding site on the surface of the VH-VL dimer. Often, the six CDRs confer target binding specificity to the antibody. However, in some instances even a single variable domain (or half of an Fv comprising only three CDRs specific for a target) can have the ability to recognize and bind target. “Single-chain Fv” or “scFv” antibody fragments comprise the VH and VL domains of an antibody in a single polypeptide chain. Generally, the Fv polypeptide further comprises a polypeptide linker between the VH and VL domain which enables the scFv to form the desired structure for target binding. “Single domain antibodies” are composed of a single VH or VL domains which exhibit sufficient affinity to the target. In a specific embodiment, the single domain antibody is a camelid antibody (see, e.g., Riechmann, 1999, Journal of Immunological Methods 231:25-38).
The Fab fragment contains the constant domain of the light chain and the first constant domain (CH 1 ) of the heavy chain. Fab′ fragments differ from Fab fragments by the addition of a few residues at the carboxyl terminus of the heavy chain CH 1 domain including one or more cysteines from the antibody hinge region. F(ab′) fragments are produced by cleavage of the disulfide bond at the hinge cysteines of the F(ab′) 2 pepsin digestion product. Additional chemical couplings of antibody fragments are known to those of ordinary skill in the art.
In certain embodiments, the anti-VEGF antibodies of the disclosure are monoclonal antibodies. The term “monoclonal antibody” as used herein is not limited to antibodies produced through hybridoma technology. The term “monoclonal antibody” refers to an antibody that is derived from a single clone, including any eukaryotic, prokaryotic, or phage clone, and not the method by which it is produced. Monoclonal antibodies useful in connection with the present disclosure can be prepared using a wide variety of techniques known in the art including the use of hybridoma, recombinant, and phage display technologies, or a combination thereof. The anti-VEGF antibodies of the disclosure include chimeric, primatized, humanized, or human antibodies.
The anti-VEGF antibodies of the disclosure can be chimeric antibodies. The term “chimeric” antibody as used herein refers to an antibody having variable sequences derived from a non-human immunoglobulin, such as rat or mouse antibody, and human immunoglobulin constant regions, typically chosen from a human immunoglobulin template. Methods for producing chimeric antibodies are known in the art. See, e.g., Morrison, 1985, Science 229(4719):1202-7; Oi et al., 1986, BioTechniques 4:214-221; Gillies et al., 1985, J. Immunol. Methods 125:191-202; U.S. Pat. Nos. 5,807,715; 4,816,567; and 4,816,397, which are incorporated herein by reference in their entireties.
The anti-VEGF antibodies of the disclosure can be humanized. “Humanized” forms of non-human (e.g., murine) antibodies are chimeric immunoglobulins, immunoglobulin chains or fragments thereof (such as Fv, Fab, Fab′, F(a130 2 or other target-binding subdomains of antibodies) which contain minimal sequences derived from non-human immunoglobulin. In general, the humanized antibody will comprise substantially all of at least one, and typically two, variable domains, in which all or substantially all of the CDR regions correspond to those of a non-human immunoglobulin and all or substantially all of the FR regions are those of a human immunoglobulin sequence. The humanized antibody can also comprise at least a portion of an immunoglobulin constant region (Fc), typically that of a human immunoglobulin consensus sequence. Methods of antibody humanization are known in the art. See, e.g., Riechmann et al., 1988, Nature 332:323-7; U.S. Pat. Nos. 5,530,101; 5,585,089; 5,693,761; 5,693,762; and 6,180,370 to Queen et al.; EP239400; PCT publication WO 91/09967; U.S. Pat. No. 5,225,539; EP592106; EP519596; Padlan, 1991, Mol. Immunol., 28:489-498; Studnicka et al., 1994, Prot. Eng. 7:805-814; Roguska et al., 1994, Proc. Natl. Acad. Sci. 91:969-973; and U.S. Pat. No. 5,565,332, all of which are hereby incorporated by reference in their entireties.
The anti-VEGF antibodies of the disclosure can be human antibodies. Completely “human” anti-VEGF antibodies can be desirable for therapeutic treatment of human patients. As used herein, “human antibodies” include antibodies having the amino acid sequence of a human immunoglobulin and include antibodies isolated from human immunoglobulin libraries or from animals transgenic for one or more human immunoglobulin and that do not express endogenous immunoglobulins. Human antibodies can be made by a variety of methods known in the art including phage display methods using antibody libraries derived from human immunoglobulin sequences. See U.S. Pat. Nos. 4,444,887 and 4,716,111; and PCT publications WO 98/46645; WO 98/50433; WO 98/24893; WO 98/16654; WO 96/34096; WO 96/33735; and WO 91/10741, each of which is incorporated herein by reference in its entirety. Human antibodies can also be produced using transgenic mice which are incapable of expressing functional endogenous immunoglobulins, but which can express human immunoglobulin genes. See, e.g., PCT publications WO 98/24893; WO 92/01047; WO 96/34096; WO 96/33735; U.S. Pat. Nos. 5,413,923; 5,625,126; 5,633,425; 5,569,825; 5,661,016; 5,545,806; 5,814,318; 5,885,793; 5,916,771; and 5,939,598, which are incorporated by reference herein in their entireties. In addition, companies such as Medarex (Princeton, N.J.), Astellas Pharma (Deerfield, Ill.), Amgen (Thousand Oaks, Calif.) and Regeneron (Tarrytown, N.Y.) can be engaged to provide human antibodies directed against a selected antigen using technology similar to that described above. Completely human antibodies that recognize a selected epitope can be generated using a technique referred to as “guided selection.” In this approach a selected non-human monoclonal antibody, e.g., a mouse antibody, is used to guide the selection of a completely human antibody recognizing the same epitope (Jespers et al., 1988, Biotechnology 12:899-903).
The anti-VEGF antibodies of the disclosure can be primatized. The term “primatized antibody” refers to an antibody comprising monkey variable regions and human constant regions. Methods for producing primatized antibodies are known in the art. See e.g., U.S. Pat. Nos. 5,658,570; 5,681,722; and 5,693,780, which are incorporated herein by reference in their entireties.
The anti-VEGF antibodies of the disclosure can be multi-specific, e.g., bispecific, antibodies, tri-specific or quad-specific antibodies.
In certain aspects, multi-specific antibodies can include Fc mutations that enforce correct chain association in multi-specific antibodies, as described by Klein et al., 2012, mAbs 4(6):653-663.
Bispecific antibodies are monoclonal, often human or humanized, antibodies that have binding specificities for at least two different antigens.
In certain embodiments, the anti-VEGF antibodies or fragments thereof can be components of multi-specific antibodies that are based on full immunoglobulin molecules and include Fc regions, for example IgG Fc regions. Such structures can include, but not limited to, IgG-Fv, IgG-(scFv)2, DVD-Ig, (scFv)2-(scFv)2-Fc and (scFv)2-Fc-(scFv)2. In case of IgG-(scFv)2, the scFv can be attached to either the N-terminal or the C-terminal end of either the heavy chain or the light chain. Exemplary multi-specific molecules that include Fc regions and into which the anti-VEGF antibodies or antibody fragments can be incorporated have been reviewed by Kontermann, 2012, mAbs 4(2):182-197, Yazaki et al., 2013, Protein Engineering, Design & Selection 26(3):187-193, and Grote et al., 2012, in Proetzel & Ebersbach (eds.), Antibody Methods and Protocoles, Methods in Molecular Biology vol. 901, chapter 16:247-263 (DOI 10.1007/978-1-61779-931-0_016), the contents of each which are incorporated by reference in their entireties. In other aspects, the anti-VEGF fragments thereof can be components of multi-specific molecules without Fc regions, based on fragments of IgG or DVD or scFv. Exemplary multi-specific molecules that lack Fc regions and into which the anti-VEGF antibodies or antibody fragments can be incorporated, such as scFv dimers (diabodies), trimers (triabodies) and tetramers (tetrabodies), Fab dimers (conjugates by adhesive polypeptide or protein domains) and Fab trimers (chemically conjugated), are described by Hudson and Souriau, 2003, Nature Medicine 9:129-134, the contents of which incorporated by reference herein in their entireties. In the present disclosure, one of the binding specificities can be directed towards VEGF, the other can be for any other antigen, e.g., for a cell-surface protein, receptor, receptor subunit, tissue-specific antigen, virally derived protein, virally encoded envelope protein, bacterially derived protein, or bacterial surface protein, etc. In a specific embodiment, an antibody of the disclosure is a bispecific antibody with binding specificities for both VEGF and CD3. In another specific embodiment, an antibody of the disclosure is a bispecific antibody with binding specificities for both VEGF and DLL4.
The anti-VEGF antibodies of the disclosure can be dual variable domain (“DVD”) immunoglobulins (“DVD-Ig”) (see, Gu & Ghayur, 2012, Methods in Enzymology 502:25-41, incorporated by reference herein in its entirety). A DVD-Ig combines the target-binding variable domains of two monoclonal antibodies via linkers to create a tetravalent, dual-targeting single agent. Suitable linkers for use in the light chains of the DVDs of the present disclosure include those identified on Table 2.1 on page 30 of Gu & Ghayur, 2012, Methods in Enzymology 502:25-41, incorporated by reference herein: the short κ chain linkers ADAAP (SEQ ID NO:417) (murine) and TVAAP (SEQ ID NO: 418) (human); the long κ chain linkers ADAAPTVSIFP (SEQ ID NO:419) (murine) and TVAAPSVFIFPP (SEQ ID NO:420) (human); the short λ chain linker QPKAAP (SEQ ID NO:421) (human); the long λ, chain linker QPKAAPSVTLFPP (SEQ ID NO:422) (human); the GS-short linker GGSGG (SEQ ID NO:423), the GS-medium linker GGSGGGGSG (SEQ ID NO:424), and the GS-long linker GGSGGGGSGGGGS (SEQ ID NO:425) (all GS linkers are murine and human). Suitable linkers for use in the heavy chains of the DVDs of the present disclosure include those identified on Table 2.1 on page 30 of Gu & Ghayur, 2012, Methods in Enzymology 502:25-41, incorporated by reference herein: the short linkers AKTTAP (SEQ ID NO:426) (murine) and ASTKGP (SEQ ID NO:427) (human); the long linkers AKTTAPSVYPLAP (SEQ ID NO:428) (murine) and ASTKGPSVFPLAP (SEQ ID NO:429) (human); the GS-short linker GGGGSG (SEQ ID NO:430), the GS-medium linker GGGGSGGGGS (SEQ ID NO:431), and the GS-long linker GGGGSGGGGSGGGG (SEQ ID NO:432) (all GS linkers are murine and human). Preferably human linkers are used for human or humanized DVD-Igs. Other examples of linkers that can be employed in the the DVD-Ig molecules of the disclosure include, but are not limited to, those described in DiGiammarino et al., 2011, mAbs 3:487-494.
In the present disclosure, the DVD-Ig is directed towards VEGF and a second target. In an embodiment, the second target is DLL4. The anti-VEGF component includes CDRs with one or more substitutions disclosed herein as compared to the CDRs of bevacizumab or ranibizumab. Anti-DLL4 antibodies and antibody fragments useful in designing a DVD-Ig of the disclosure are described in Chen et al., U.S. Patent Application Publication No. 2011/0217237, published Sep. 8, 2011 (incorporated by reference herein in its entirety). In other embodiments, the second target is EGFR, HER2, ErbB3, or any other target described in Tariq et al., U.S. Patent Application Publication No. 2011/0044980, published Feb. 24, 2011 (incorporated by reference herein in its entirety).
Target binding domains of DVD immunoglobulins are typically arranged in tandem, with one variable domain stacked on top of another to form inner and outer Fv domains. The VEGF targeting variable domains can be arranged as inner or outer Fv domains of a DVD-Ig. In a specific embodiment, the DVD-Ig has VEGF targeting variable domains arranged as inner Fv domains and DLL4 targeting variable domains arranged as outer Fv domains. FIG. 31 shows a schematic of a DVD-Ig of the disclosure having VEGF targeting inner Fv domains and DLL4 targeting outer Fv domains.
The anti-VEGF antibodies of the disclosure include derivatized antibodies. For example, but not by way of limitation, derivatized antibodies are typically modified by glycosylation, acetylation, pegylation, phosphorylation, amidation, derivatization by known protecting/blocking groups, proteolytic cleavage, linkage to a cellular ligand or other protein (see Section 6.6 for a discussion of antibody conjugates), etc. Any of numerous chemical modifications can be carried out by known techniques, including, but not limited to, specific chemical cleavage, acetylation, formylation, metabolic synthesis of tunicamycin, etc. Additionally, the derivative can contain one or more non-natural amino acids, e.g., using ambrx technology (see, e.g., Wolfson; 2006, Chem. Biol. 13(10):1011-2).
In yet another embodiment of the disclosure, the anti-VEGF antibodies or fragments thereof can be antibodies or antibody fragments whose sequence has been modified to alter at least one constant region-mediated biological effector function relative to the corresponding wild type sequence.
For example, in some embodiments, an anti-VEGF antibody of the disclosure can be modified to reduce at least one constant region-mediated biological effector function relative to an unmodified antibody, e.g., reduced binding to the Fc receptor (FcγR). FcγR binding can be reduced by mutating the immunoglobulin constant region segment of the antibody at particular regions necessary for FcγR interactions (see e.g., Canfield and Morrison, 1991, J. Exp. Med. 173:1483-1491; and Lund et al., 1991, J. Immunol. 147:2657-2662). Reduction in FcγR binding ability of the antibody can also reduce other effector functions which rely on FcγR interactions, such as opsonization, phagocytosis and antigen-dependent cellular cytotoxicity (“ADCC”).
In other embodiments, an anti-VEGF antibody of the disclosure can be modified to acquire or improve at least one constant region-mediated biological effector function relative to an unmodified antibody, e.g., to enhance FcγR interactions (see, e.g., US 2006/0134709). For example, an anti-VEGF antibody of the disclosure can have a constant region that binds FcγRIIA, FcγRIIB and/or FcγRIIIA with greater affinity than the corresponding wild type constant region.
Thus, antibodies of the disclosure can have alterations in biological activity that result in increased or decreased opsonization, phagocytosis, or ADCC. Such alterations are known in the art. For example, modifications in antibodies that reduce ADCC activity are described in U.S. Pat. No. 5,834,597. An exemplary ADCC lowering variant corresponds to “mutant 3” shown in FIG. 4 of U.S. Pat. No. 5,834,597, in which residue 236 is deleted and residues 234, 235 and 237 (using EU numbering) are substituted with alanines.
In some embodiments, the anti-VEGF antibodies of the disclosure have low levels of or lack fucose. Antibodies lacking fucose have been correlated with enhanced ADCC (activity, especially at low doses of antibody. See Shields et al., 2002, J. Biol. Chem. 277:26733-26740; Shinkawa et al., 2003, J. Biol. Chem. 278:3466-73. Methods of preparing fucose-less antibodies include growth in rat myeloma YB2/0 cells (ATCC CRL 1662). YB2/0 cells express low levels of FUT8 mRNA, which encodes α-1,6-fucosyltransferase, an enzyme necessary for fucosylation of polypeptides.
In yet another aspect, the anti-VEGF antibodies or fragments thereof can be antibodies or antibody fragments that have been modified to increase or reduce their binding affinities to the fetal Fc receptor, FcRn, for example by mutating the immunoglobulin constant region segment at particular regions involved in FcRn interactions (see, e.g., WO 2005/123780). In particular embodiments, an anti-VEGF antibody of the IgG class is mutated such that at least one of amino acid residues 250, 314, and 428 of the heavy chain constant region is substituted alone, or in any combinations thereof, such as at positions 250 and 428, or at positions 250 and 314, or at positions 314 and 428, or at positions 250, 314, and 428, with positions 250 and 428 a specific combination. For position 250, the substituting amino acid residue can be any amino acid residue other than threonine, including, but not limited to, alanine, cysteine, aspartic acid, glutamic acid, phenylalanine, glycine, histidine, isoleucine, lysine, leucine, methionine, asparagine, proline, glutamine, arginine, serine, valine, tryptophan, or tyrosine. For position 314, the substituting amino acid residue can be any amino acid residue other than leucine, including, but not limited to, alanine, cysteine, aspartic acid, glutamic acid, phenylalanine, glycine, histidine, isoleucine, lysine, methionine, asparagine, proline, glutamine, arginine, serine, threonine, valine, tryptophan, or tyrosine. For position 428, the substituting amino acid residues can be any amino acid residue other than methionine, including, but not limited to, alanine, cysteine, aspartic acid, glutamic acid, phenylalanine, glycine, histidine, isoleucine, lysine, leucine, asparagine, proline, glutamine, arginine, serine, threonine, valine, tryptophan, or tyrosine. Specific combinations of suitable amino acid substitutions are identified in Table 1 of U.S. Pat. No. 7,217,797, which table is incorporated by reference herein in its entirety. Such mutations increase the antibody's binding to FcRn, which protects the antibody from degradation and increases its half-life.
Fc regions can include Fc mutations that enforce correct chain association in multi-specific antibodies, as described by Klein et al., 2012, mAbs 4(6):653-663.
In yet other aspects, an anti-VEGF antibody has one or more amino acids inserted into one or more of its hypervariable regions, for example as described in Jung and Plückthun, 1997, Protein Engineering 10(9):959-966; Yazaki et al., 2004, Protein Eng Des. Sel. 17(5):481-9. Epub 2004 Aug. 17; and US 2007/0280931.
In various embodiments, the anti-VEGF antibodies or fragments thereof can be antibodies or antibody fragments that have been modified for increased expression in heterologous hosts. In certain embodiments, the anti-VEGF antibodies or fragments thereof can be antibodies or antibody fragments that have been modified for increased expression in and/or secretion from heterologous host cells. In some embodiments, the anti-VEGF antibodies or fragments thereof are modified for increased expression in bacteria, such as E. coli . In other embodiments, the anti-VEGF antibodies or fragments thereof are modified for increased expression in yeast (Kieke et al., 1999, Proc. Nat'l Acad. Sci. USA 96:5651-5656). In still other embodiments, the anti-VEGF antibodies or fragments thereof are modified for increased expression in insect cells. In additional embodiments, the anti-VEGF antibodies or fragments thereof are modified for increased expression in mammalian cells, such as CHO cells.
In certain embodiments, the anti-VEGF antibodies or fragments thereof can be antibodies or antibody fragments that have been modified to increase stability of the antibodies during production. In some embodiments, the antibodies or fragments thereof can be modified to replace one or more amino acids such as asparagine or glutamine that are susceptible to nonenzymatic deamidation with amino acids that do not undergo deamidation (Huang et al., 2005, Anal. Chem. 77:1432-1439). In other embodiments, the antibodies or fragments thereof can be modified to replace one or more amino acids that is susceptible to oxidation, such as methionine, cysteine or tryptophan, with an amino acid that does not readily undergo oxidation. In still other embodiments, the antibodies or fragments thereof can be modified to replace one or more amino acids that is susceptible to cyclization, such as asparagine or glutamic acid, with an amino acid that does not readily undergo cyclization.
6.2 Nucleic Acids and Expression Systems
The present disclosure encompasses nucleic acid molecules and host cells encoding the anti-VEGF antibodies of the disclosure.
An anti-VEGF antibody of the disclosure can be prepared by recombinant expression of immunoglobulin light and heavy chain genes in a host cell. To express an antibody recombinantly, a host cell is transfected with one or more recombinant expression vectors carrying DNA fragments encoding the immunoglobulin light and heavy chains of the antibody such that the light and heavy chains are expressed in the host cell and, optionally, secreted into the medium in which the host cells are cultured, from which medium the antibodies can be recovered. Standard recombinant DNA methodologies are used to obtain antibody heavy and light chain genes, incorporate these genes into recombinant expression vectors and introduce the vectors into host cells, such as those described in Molecular Cloning; A Laboratory Manual, Second Edition (Sambrook, Fritsch and Maniatis (eds), Cold Spring Harbor, N. Y., 1989), Current Protocols in Molecular Biology (Ausubel, F. M. et al., eds., Greene Publishing Associates, 1989) and in U.S. Pat. No. 4,816,397.
In one embodiment, the anti-VEGF antibodies are similar to bevacizumab or ranibizumab but for changes in one or more CDRs. In another embodiment, the anti-VEGF antibodies are similar to bevacizumab or ranibizumab but for changes in one or more framework regions. In yet another embodiment, the anti-VEGF antibodies are similar to bevacizumab or ranibizumab but for changes in one or more CDRs and in one or more framework regions. Such antibodies are referred to herein collectively as having “bevacizumab-related” or “ranibizumab-related” sequences and are sometimes referenced simply as anti-VEGF antibodies of the disclosure. To generate nucleic acids encoding anti-VEGF antibodies, DNA fragments encoding the light and heavy chain variable regions are first obtained. These DNAs can be obtained by amplification and modification of germline DNA or cDNA encoding light and heavy chain variable sequences, for example using the polymerase chain reaction (PCR). Germline DNA sequences for human heavy and light chain variable region genes are known in the art (see, e.g., the “VBASE” human germline sequence database; see also Kabat, E. A. et al., 1991, Sequences of Proteins of Immunological Interest, Fifth Edition, U.S. Department of Health and Human Services, NIH Publication No. 91-3242; Tomlinson et al., 1992, J. Mol. Biol. 22T:116-198; and Cox et al., 1994, Eur. J. Immunol. 24:827-836; the contents of each of which are incorporated herein by reference). A DNA fragment encoding the heavy or light chain variable region of bevacizumab or ranibizumab can be synthesized and used as a template for mutagenesis to generate a variant as described herein using routine mutagenesis techniques; alternatively, a DNA fragment encoding the variant can be directly synthesized.
Once DNA fragments encoding anti-VEGF VH and VL segments are obtained, these DNA fragments can be further manipulated by standard recombinant DNA techniques, for example to convert the variable region genes to full-length antibody chain genes, to Fab fragment genes or to a scFv gene. In these manipulations, a VL- or VH-encoding DNA fragment is operatively linked to another DNA fragment encoding another protein, such as an antibody constant region or a flexible linker. The term “operatively linked,” as used in this context, is intended to mean that the two DNA fragments are joined such that the amino acid sequences encoded by the two DNA fragments remain in-frame.
The isolated DNA encoding the VH region can be converted to a full-length heavy chain gene by operatively linking the VH-encoding DNA to another DNA molecule encoding heavy chain constant regions (CH 1 , CH 2 , CH 3 and, optionally, CH 4 ). The sequences of human heavy chain constant region genes are known in the art (see, e.g., Kabat, E. A. et al., 1991, Sequences of Proteins of Immunological Interest, Fifth Edition, U.S. Department of Health and Human Services, NIH Publication No. 91-3242) and DNA fragments encompassing these regions can be obtained by standard PCR amplification. The heavy chain constant region can be an IgG 1 , IgG 2 , IgG 3 , IgG 4 , IgA, IgE, IgM or IgD constant region, but in certain embodiments is an IgG 1 or IgG 4 constant region. For a Fab fragment heavy chain gene, the VH-encoding DNA can be operatively linked to another DNA molecule encoding only the heavy chain CH 1 constant region.
The isolated DNA encoding the VL region can be converted to a full-length light chain gene (as well as a Fab light chain gene) by operatively linking the VL-encoding DNA to another DNA molecule encoding the light chain constant region, CL. The sequences of human light chain constant region genes are known in the art (see, e.g., Kabat, E. A. et al., 1991, Sequences of Proteins of Immunological Interest, Fifth Edition (U.S. Department of Health and Human Services, NIH Publication No. 91-3242)) and DNA fragments encompassing these regions can be obtained by standard PCR amplification. The light chain constant region can be a kappa or lambda constant region, but in certain embodiments is a kappa constant region. To create a scFv gene, the VH- and VL-encoding DNA fragments are operatively linked to another fragment encoding a flexible linker, e.g., encoding the amino acid sequence (Gly 4 ˜Ser) 3 (SEQ ID NO:412), such that the VH and VL sequences can be expressed as a contiguous single-chain protein, with the VL and VH regions joined by the flexible linker (see, e.g., Bird et al., 1988, Science 242:423-426; Huston et al., 1988, Proc. Natl. Acad. Sci. USA 85:5879-5883; McCafferty et al., 1990, Nature 348:552-554).
To express the anti-VEGF antibodies of the disclosure, DNAs encoding partial or full-length light and heavy chains, obtained as described above, are inserted into expression vectors such that the genes are operatively linked to transcriptional and translational control sequences. In this context, the term “operatively linked” is intended to mean that an antibody gene is ligated into a vector such that transcriptional and translational control sequences within the vector serve their intended function of regulating the transcription and translation of the antibody gene. The expression vector and expression control sequences are chosen to be compatible with the expression host cell used. The antibody light chain gene and the antibody heavy chain gene can be inserted into separate vectors or, more typically, both genes are inserted into the same expression vector.
The antibody genes are inserted into the expression vector by standard methods (e.g., ligation of complementary restriction sites on the antibody gene fragment and vector, or blunt end ligation if no restriction sites are present). Prior to insertion of the light or heavy chain sequences of the anti-VEGF antibodies of the disclosure, the expression vector can already carry antibody constant region sequences. For example, one approach to converting the anti-VEGF VH and VL sequences to full-length antibody genes is to insert them into expression vectors already encoding heavy chain constant and light chain constant regions, respectively, such that the VH segment is operatively linked to the CH segment(s) within the vector and the VL segment is operatively linked to the CL segment within the vector. Additionally or alternatively, the recombinant expression vector can encode a signal peptide that facilitates secretion of the antibody chain from a host cell. The antibody chain gene can be cloned into the vector such that the signal peptide is linked in-frame to the amino terminus of the antibody chain gene. The signal peptide can be an immunoglobulin signal peptide or a heterologous signal peptide (i.e., a signal peptide from a non-immunoglobulin protein).
In addition to the antibody chain genes, the recombinant expression vectors of the disclosure carry regulatory sequences that control the expression of the antibody chain genes in a host cell. The term “regulatory sequence” is intended to include promoters, enhancers and other expression control elements (e.g., polyadenylation signals) that control the transcription or translation of the antibody chain genes. Such regulatory sequences are described, for example, in Goeddel, Gene Expression Technology: Methods in Enzymology 185 (Academic Press, San Diego, Calif., 1990). It will be appreciated by those skilled in the art that the design of the expression vector, including the selection of regulatory sequences may depend on such factors as the choice of the host cell to be transformed, the level of expression of protein desired, etc. Suitable regulatory sequences for mammalian host cell expression include viral elements that direct high levels of protein expression in mammalian cells, such as promoters and/or enhancers derived from cytomegalovirus (CMV) (such as the CMV promoter/enhancer), Simian Virus 40 (SV40) (such as the SV40 promoter/enhancer), adenovirus, (e.g., the adenovirus major late promoter (AdMLP)) and polyoma. For further description of viral regulatory elements, and sequences thereof, see e.g., U.S. Pat. No. 5,168,062 by Stinski, U.S. Pat. No. 4,510,245 by Bell et al., and U.S. Pat. No. 4,968,615 by Schaffner et al.,
In addition to the antibody chain genes and regulatory sequences, the recombinant expression vectors of the disclosure can carry additional sequences, such as sequences that regulate replication of the vector in host cells (e.g., origins of replication) and selectable marker genes. The selectable marker gene facilitates selection of host cells into which the vector has been introduced (see e.g., U.S. Pat. Nos. 4,399,216, 4,634,665 and 5,179,017, all by Axel et al.). For example, typically the selectable marker gene confers resistance to drugs, such as G418, puromycin, blasticidin, hygromycin or methotrexate, on a host cell into which the vector has been introduced. Suitable selectable marker genes include the dihydrofolate reductase (DHFR) gene (for use in DHFR − host cells with methotrexate selection/amplification) and the neo gene (for G418 selection). For expression of the light and heavy chains, the expression vector(s) encoding the heavy and light chains is transfected into a host cell by standard techniques. The various forms of the term “transfection” are intended to encompass a wide variety of techniques commonly used for the introduction of exogenous DNA into a prokaryotic or eukaryotic host cell, e.g., electroporation, lipofection, calcium-phosphate precipitation, DEAE-dextran transfection and the like.
It is possible to express the antibodies of the disclosure in either prokaryotic or eukaryotic host cells. In certain embodiments, expression of antibodies is performed in eukaryotic cells, e.g., mammalian host cells, for optimal secretion of a properly folded and immunologically active antibody. Exemplary mammalian host cells for expressing the recombinant antibodies of the disclosure include Chinese Hamster Ovary (CHO cells) (including DHFR − CHO cells, described in Urlaub and Chasin, 1980, Proc. Natl. Acad. Sci. USA 77:4216-4220, used with a DHFR selectable marker, e.g., as described in Kaufman and Sharp, 1982, Mol. Biol. 159:601-621), NSO myeloma cells, COS cells, 293 cells and SP2/0 cells. When recombinant expression vectors encoding antibody genes are introduced into mammalian host cells, the antibodies are produced by culturing the host cells for a period of time sufficient to allow for expression of the antibody in the host cells or secretion of the antibody into the culture medium in which the host cells are grown. Antibodies can be recovered from the culture medium using standard protein purification methods. Host cells can also be used to produce portions of intact antibodies, such as Fab fragments or scFv molecules. It is understood that variations on the above procedure are within the scope of the present disclosure. For example, it can be desirable to transfect a host cell with DNA encoding either the light chain or the heavy chain (but not both) of an anti-VEGF antibody of this disclosure.
Recombinant DNA technology can also be used to remove some or all of the DNA encoding either or both of the light and heavy chains that is not necessary for binding to VEGF. The molecules expressed from such truncated DNA molecules are also encompassed by the antibodies of the disclosure.
In addition, bifunctional antibodies can be produced in which one heavy and one light chain are an antibody of the disclosure and the other heavy and light chain are specific for an antigen other than VEGF by crosslinking an antibody of the disclosure to a second antibody by standard chemical crosslinking methods. Bifunctional antibodies can also be made by expressing a nucleic acid engineered to encode a bifunctional antibody.
In certain embodiments, dual specific antibodies, i.e., antibodies that bind VEGF and an unrelated antigen using the same binding site, can be produced by mutating amino acid residues in the light chain and/or heavy chain CDRs. In various embodiments, dual specific antibodies that bind two antigens, such as HER2 and VEGF, can be produced by mutating amino acid residues in the periphery of the antigen binding site (Bostrom et al., 2009, Science 323:1610-1614). Dual functional antibodies can be made by expressing a nucleic acid engineered to encode a dual specific antibody.
For recombinant expression of an anti-VEGF antibody of the disclosure, the host cell can be co-transfected with two expression vectors of the disclosure, the first vector encoding a heavy chain derived polypeptide and the second vector encoding a light chain derived polypeptide. Typically, the two vectors each contain a separate selectable marker. Alternatively, a single vector can be used which encodes both heavy and light chain polypeptides.
In yet other embodiments, antibodies (including multi-specific antibodies) and their fragments can be produced by in vitro translation using bacterial or mammalian cell lysates, followed by protein folding or assembly assisted by the addition of molecular chaperones. Such methods have been described, for example, by Yin et al., 2012, mAbs, 4:217-225.
Once a nucleic acid encoding one or more portions of an anti-VEGF antibody is generated, further alterations or mutations can be introduced into the coding sequence, for example to generate nucleic acids encoding antibodies with different CDR sequences, antibodies with reduced affinity to the Fc receptor, or antibodies of different subclasses.
The anti-VEGF antibodies of the disclosure can also be produced by chemical synthesis (e.g., by the methods described in Solid Phase Peptide Synthesis, 2 nd ed., 1984 The Pierce Chemical Co., Rockford, Ill.). Variant antibodies can also be generated using a cell-free platform (see, e.g., Chu et al., 2001, Biochemia No. 2 (Roche Molecular Biologicals)).
Once an anti-VEGF antibody of the disclosure has been produced by recombinant expression, it can be purified by any method known in the art for purification of an immunoglobulin molecule, for example, by chromatography (e.g., ion exchange, affinity, particularly by affinity for VEGF after Protein A or Protein G selection, and sizing column chromatography), centrifugation, differential solubility, or by any other standard technique for the purification of proteins. Further, the anti-VEGF antibodies of the present disclosure or fragments thereof can be fused to heterologous polypeptide sequences described herein or otherwise known in the art to facilitate purification.
Once isolated, an anti-VEGF antibody can, if desired, be further purified, e.g., by high performance liquid chromatography (See, e.g., Fisher, Laboratory Techniques In Biochemistry And Molecular Biology (Work and Burdon, eds., Elsevier, 1980), or by gel filtration chromatography on a Superdex™ 75 column (Pharmacia Biotech AB, Uppsala, Sweden).
6.3 Biological Activities of Anti-VEGF Antibodies
In certain embodiments, the anti-VEGF antibodies of the disclosure have certain biological activities, such as competing with bevacizumab or ranibizumab for binding to VEGF or neutralizing VEGF activity.
Accordingly, in certain embodiments, anti-VEGF antibodies of the disclosure compete with bevacizumab or ranibizumab for binding to VEGF. The ability to compete for binding to VEGF can be tested using a competition assay. In one example of a competition assay, VEGF is adhered onto a solid surface, e.g., a microwell plate, by contacting the plate with a solution of VEGF (e.g., at a concentration of 1 μg/mL in PBS over night at 4° C.). The plate is washed (e.g., 0.1% Tween 20 in PBS) and blocked (e.g., in Superblock, Thermo Scientific, Rockford, Ill.). A mixture of sub-saturating amount of biotinylated bevacizumab (80 ng/mL) or an equivalent amount of biotinylated ranibizumab and unlabeled bevacizumab (or ranibizumab as the case may be) (the “reference” antibody) or competing anti-VEGF antibody (the “test” antibody) antibody in serial dilution (e.g., at a concentration of 2.8 μg/mL, 8.3 μg/mL, or 25 μg/mL) in ELISA buffer (e.g., 1% BSA and 0.1% Tween 20 in PBS) is added to wells and plates are incubated for 1 hour with gentle shaking. The plate is washed, 1 μg/mL HRP-conjugated Streptavidin diluted in ELISA buffer is added to each well and the plates incubated for 1 hour. Plates are washed and bound antibodies were detected by addition of substrate (e.g., TMB, Biofx Laboratories Inc., Owings Mills, Md.). The reaction is terminated by addition of stop buffer (e.g., Bio FX Stop Reagents, Biofx Laboratories Inc., Owings Mills, Md.) and the absorbance is measured at 650 nm using microplate reader (e.g., VERSAmax, Molecular Devices, Sunnyvale, Calif.). Variations on this competition assay can also be used to test competition between an anti-VEGF antibody of the disclosure and bevacizumab or ranibizumab. For example, in certain aspects, the anti-VEGF antibody is used as a reference antibody and bevacizumab or ranibizumab is used as a test antibody. Additionally, instead of soluble VEGF, membrane-bound VEGF expressed on the surfaces of cell (for example mammalian cells) in culture can be used. Other formats for competition assays are known in the art and can be employed.
In various embodiments, an anti-VEGF antibody of the disclosure reduces the binding of labeled bevacizumab or ranibizumab by at least 30%, by at least 40%, by at least 50%, by at least 60%, by at least 70%, by at least 80%, by at least 90%, by at least 95%, by at least 99% or by a percentage ranging between any of the foregoing values (e.g., an anti-VEGF antibody of the disclosure reduces the binding of labeled bevacizumab or ranibizumab by 50% to 70%) when the anti-VEGF antibody is used at a concentration of 0.08 μg/mL, 0.4 μg/mL, 2 μg/mL, 10 μg/mL, 50 μg/mL, 100 μg/mL or at a concentration ranging between any of the foregoing values (e.g., at a concentration ranging from 2 μg/mL to 10 μg/mL).
In other embodiments, bevacizumab or ranibizumab reduces the binding of a labeled anti-VEGF antibody of the disclosure by at least 40%, by at least 50%, by at least 60%, by at least 70%, by at least 80%, by at least 90%, or by a percentage ranging between any of the foregoing values (e.g., bevacizumab or ranibizumab reduces the binding of a labeled an anti-VEGF antibody of the disclosure by 50% to 70%) when bevacizumab or ranibizumab is used at a concentration of 0.4 μg/mL, 2 μg/mL, 10 μg/mL, 50 μg/mL, 250 μg/mL or at a concentration ranging between any of the foregoing values (e.g., at a concentration ranging from 2 μg/mL to 10 μg/mL).
In other aspects, an anti-VEGF antibody of the disclosure inhibits (or neutralizes) VEGF activity in a range of in vitro assays, such as cell proliferation or cell migration. For example, in one embodiment, the VEGF activity assayed is induction of endothelial cell (“EC”) proliferation (see, e.g., protocol of Qin et al., 2006, J. Biol. Chem. 281:32550-32558). In another embodiment, the VEGF activity assayed is induction of EC migration (see, e.g., the in vitro scratch assay protocol described of Liang et al., 2007, Nat. Protoc. 2:329-333). In a specific embodiment, an anti-VEGF antibody is tested for the ability to reverse proliferation and cell migration stimulated by VEGF and delocalization of tight junction proteins induced by VEGF 165 in immortalized bovine retinal endothelial cells (Deissler et al., 2008, British Journal of Ophthalmology 92:839-843). In yet another embodiment, the neutralization of VEGF activity is assayed using a reporter assay (see, e.g., Yohno et al., 2003, Biological & Pharmaceutical Bulletin 26(4):417-20 and U.S. Pat. No. 6,787,323).
Other formats for VEGF neutralization assays are known in the art and can be employed.
In various embodiments, an anti-VEGF antibody of the disclosure neutralizes VEGF by at least 30%, by at least 40%, by at least 50%, by at least 60%, by at least 70%, by at least 80%, by at least 90%, or by a percentage ranging between any of the foregoing values (e.g., an anti-VEGF antibody of the disclosure neutralizes VEGF activity by 50% to 70%) when the anti-VEGF antibody is used at a concentration of 2 ng/mL, 5 ng/mL, 10 ng/mL, 20 ng/mL, 0.1 μg/mL, 0.2 μg/mL, 1 μg/mL, 2 μg/mL, 5 μg/mL, 10 μg/mL, 20 μg/mL, or at a concentration ranging between any of the foregoing values (e.g., at a concentration ranging from 1 μg/mL to 5 μg/mL).
In some embodiments, an anti-VEGF antibody of the disclosure is at least 0.7-fold as effective, 0.8-fold as effective, at least 0.9-fold as effective, at least 1-fold as effective, at least 1.1-fold as effective, at least 1.25-fold as effective, at least 1.5-fold as effective, at least 2-fold as effective, at least 5-fold as effective, at least 10-fold as effective, at least 20-fold as effective, at least 50-fold as effective, at least 100-fold as effective, at least 200-fold as effective, at least 500-fold as effective, at least 1000-fold as effective as bevacizumab or ranibizumab at neutralizing VEGF, or having an effectiveness at neutralizing VEGF relative to bevacizumab or ranibizumab ranging between any pair of the foregoing values (e.g., 0.9-fold to 5-fold as effective as bevacizumab or ranibizumab or 2-fold to 50-fold as effective as bevacizumab or ranibizumab in neutralizing VEGF).
6.4 Kinetic Properties of Anti-VEGF Antibodies
In certain embodiments, the anti-VEGF antibodies of the disclosure have a high binding affinity for VEGF. In specific embodiments, the anti-VEGF antibodies of the present disclosure have specific association rate constants (k on or k a values), dissociation rate constants (k off or k d values), affinity constants (K A values), dissociation constants (K D values) and/or IC 50 values. In various embodiments, binding constants for the interaction of the anti-VEGF antibodies with VEGF receptor can be determined using surface plasmon resonance, e.g., according to the method disclosed in Karlsson et al., 1991, J. Immunol. Methods 145:229-240. In certain aspects, such values are selected from the following embodiments.
In a specific embodiment, an anti-VEGF antibody of the disclosure binds to VEGF with a k on of at least 10 4 M −1 s −1 , at least 5×10 4 M −1 s −1 , at least 10 5 M −1 s −1 , at least 5×10 5 M −1 s −1 , at least 10 6 M −1 s −1 , at least 5×10 6 M −1 s −1 , at least 10 7 M −1 s −1 , at least 5×10 7 M −1 s −1 , at least 10 8 M −1 s −1 , at least 5×10 8 M −1 s −1 , at least 10 9 M −1 s −1 or with a k on of any range between any pair of the foregoing values (e.g., 5×10 5 to 5×10 6 M −1 s −1 or 10 7 to 10 8 M −1 s −1 ).
In another embodiment, an anti-VEGF antibody of the disclosure binds to VEGF with a k off rate of 10 −3 s −1 or less, 5×10 −4 s −1 or less, 10 −4 s −1 or less, 5×10 −5 s −1 or less, 10 −5 s −1 or less, 5×10 −6 s −1 or less, 10 −6 s −1 or less, 5×10 −7 s −1 or less, 10 −7 s −1 or less, 5×10 −8 s −1 or less, 10 −8 s −1 or less, or with a k off rate of any range between any pair of the foregoing values (e.g., 5×10 −4 to 10 −6 s −1 , or 10 −3 to 5×10 −5 s −1 ).
In another embodiment, an anti-VEGF antibody of the disclosure binds to VEGF with a K A (k on /k off ) of at least at least 10 8 M −1 , at least 5×10 9 M −1 , at least 10 10 M −1 , at least 5×10 10 M −1 , 10 11 M −1 , least 5×10 11 M −1 , at least 10 12 M −1 , at least 5×10 12 M −1 , at least 10 13 M −1 , at least 5×10 13 M −1 , at least 10 14 M −1 , at least 5×10 14 M −1 , at least 10 15 M −1 or with a K A of any range between any pair of the foregoing values (e.g., from 5×10 9 M −1 to 10 11 M −1 , or from 10 11 M −1 to 5×10 14 M −1 ).
In other embodiments, an anti-VEGF antibody of the disclosure binds to VEGF with a K D (k off /k on ) of 10 −8 M or less, 5×10 −9 M or less, 10 −9 M or less, 5×10 −10 M or less, 10 −10 M or less, 5×10 −11 M or less, 10 −11 M or less, 5×10 −12 M or less, 10 −12 M or less, 5×10 −13 M or less, 10 −13 M or less, 5×10 −14 M or less, 10 −14 M or less, 5×10 −15 M or less, 10 −15 M or less, or with a K D of any range between any pair of the foregoing values (e.g., 5×10 −9 to 5×10 −12 M, or from 5×10 −11 M to 5×10 −13 M).
In specific embodiments, the K D (k off /k on ) value is determined by assays well known in the art or described herein, e.g., ELISA, isothermal titration calorimetry (ITC), fluorescent polarization assay or any other biosensors such as BIAcore.
In some embodiments, an anti-VEGF antibody of the disclosure binds to VEGF and inhibits the binding of VEGF to a VEGF receptor (Flt-1 or Flk-1) at an IC 50 value of less than 5×10 7 nM, less than 10 7 nM, less than 5×10 6 nM, less than 10 6 nM, less than 5×10 5 nM, less than 10 5 nM, less than 5×10 4 nM, less than 10 4 nM, less than 5×10 3 nM, less than 10 3 nM, less than 5×10 2 nM, less than 100 nM, less than 90 nM, less than 80 nM, less than 70 nM, less than 65 nM, less than 60 nM, less than 50 nM, less than 40 nM, less than 30 nM, less than 25 nM, less than 20 nM, less than 15 nM, less than 12 nM, less than 10 nM, less than 5 nM, less than 1 nM, less than 5×10 −1 nM, less than 10 −1 nM, less than 5×10 −2 nM, less than 10 −2 nM, less than 5×10 −3 nM, less than 10 −3 nM, less than 5×10 −4 nM, or less than 10 −4 nM, or with an IC 50 of any range between any pair of the foregoing values (e.g., 5×10 7 to 50 nM, or 15 nM to 5×10 −3 nM). IC 50 can be measured according to methods well known in the art or described herein, e.g., ELISA.
In other embodiments, an anti-VEGF antibody of the disclosure binds to VEGF and neutralizes the activity VEGF in a bioassay (e.g., EC proliferation or migration) at an IC 50 value of less than 5×10 7 nM, less than 10 7 nM, less than 5×10 6 nM, less than 10 6 nM, less than 5×10 5 nM, less than 10 5 nM, less than 5×10 4 nM, less than 10 4 nM, less than 5×10 3 nM, less than 10 3 nM, less than 5×10 2 nM, less than 100 nM, less than 90 nM, less than 80 nM, less than 70 nM, less than 65 nM, less than 60 nM, less than 50 nM, less than 40 nM, less than 30 nM, less than 25 nM, less than 20 nM, less than 15 nM, less than 12 nM, less than 10 nM, less than 5 nM, less than 1 nM, less than 5×10 −1 nM, less than 10 −1 nM, less than 5×10 −2 nM, less than 10 −2 nM, less than 5×10 −3 nM, less than 10 −3 nM, less than 5×10 4 nM, or less than 10 4 nM, or with an IC 50 of any range between any pair of the foregoing values (e.g., 5×10 7 to 50 nM, or 15 nM to 5×10 −3 nM). An exemplary neutralization assay that can be used to measure the IC 50 of an anti-VEGF antibody is described in Section 6.3 below.
In certain embodiments, an anti-VEGF antibody binds to VEGF and inhibits the binding of VEGF to Flt-1, Flk-1 or both, or inhibits VEGF activity in a VEGF neutralization assay, at an IC 50 value of between approximately 1 pm and approximately 1 μM. In specific embodiments, an anti-VEGF antibody binds to VEGF and inhibits the binding of VEGF to Flt-1, Flk-1 or both, or inhibits VEGF activity in a VEGF neutralization assay, at an IC 50 value of between 10 pM and 100 nM, between 100 pM and 10 nM, between 200 pM and 5 nM, between 300 pM and 4 nM, between 500 pM and 3 nM, between 750 pM and 2 nM, between 1 nM and 20 nM, between 500 pM and 40 nM, between 50 pM and 50 nM, between 250 pM and 100 nM, and between 100 nM and 1 μM, or with an IC 50 of any range between any pair of the foregoing values (e.g., 10 pM to 50 nM, or 750 pM to 2 nM).
In certain aspects of the foregoing embodiments, the IC 50 is measured in the presence of VEGF at a concentration of 0.001 μM, 0.005 μM, 0.01 μM, 0.05 μM, 0.1 μM, 0.5 μM, 1 μM, 10 μM, 20 μM, 30 μM, 40 μM, 50 μM, 60 μM, 70 μM, 80 μM, 90 μM, 100 μM, 200 μM, 300 μM, 400 μM, 500 μM, 600 μM, 700 μM, 800 μM, 900 μM, 1000 μM or at a concentration of any range between any pair of the foregoing values (e.g., 0.01 to 50 μM, or 10 μM to 100 μM).
In certain embodiments, the kinetic properties of an antibody of the disclosure are comparable to, or improved relative to, bevacizumab or of ranibizumab in a comparable assay. For example, in certain embodiments, an anti-VEGF antibody of the disclosure binds to VEGF with a k on rate ranging from approximately 0.5× to 1000× of the k on of bevacizumab or of ranibizumab, for example a k on of 0.5× of the k on of bevacizumab or of ranibizumab, a k on of 0.75× of the k on of bevacizumab or of ranibizumab, a k on of 0.9× of the k on of bevacizumab or of ranibizumab, a k on of 1× of the k on of bevacizumab or of ranibizumab, a k on of 1.1× of the k on of bevacizumab or of ranibizumab, a k on of 1.2× of the k on of bevacizumab or of ranibizumab, a k on of 1.3× of the k on of bevacizumab or of ranibizumab, a k on of 1.4× of the k on of bevacizumab or of ranibizumab, a k on of 1.5× of the k on of bevacizumab or of ranibizumab, a k on of 1.75× of the k on of bevacizumab or of ranibizumab, a k on of 2× of the k on of bevacizumab or of ranibizumab, a k on of 2.25× of the k on of bevacizumab or of ranibizumab, a k on of 2.5× of the k on of bevacizumab or of ranibizumab, a k on of 3× of the k on of bevacizumab or of ranibizumab, a k on of 4× of the k on of bevacizumab or of ranibizumab, a k on of 5× of the k on of bevacizumab or of ranibizumab, a k on of 7.5× of the k on of bevacizumab or of ranibizumab, a k on of 10× of the k on of bevacizumab or of ranibizumab, a k on of 15× of the k on of bevacizumab or of ranibizumab, a k on of 20× of the k on of bevacizumab or of ranibizumab, a k on of 50× of the k on of bevacizumab or of ranibizumab, a k on of 75× of the k on of bevacizumab or of ranibizumab, a k on of 100× of the k on of bevacizumab or of ranibizumab, a k on of 150× of the k on of bevacizumab or of ranibizumab, a k on of 200× of the k on of bevacizumab or of ranibizumab, a k on of 200× of the k on of bevacizumab or of ranibizumab or a k on ranging between any pair of the foregoing values, e.g., a k on of 2×-75× of the k on of bevacizumab or of ranibizumab, a k on of 5×-100× of the k on of bevacizumab or of ranibizumab, a k on of 0.5×-1000× of the k on of bevacizumab or of ranibizumab, a k on of 0.75×-200× of the k on of bevacizumab or of ranibizumab, etc.
In certain embodiments, an anti-VEGF antibody of the disclosure binds to VEGF with a k off rate ranging from 0.001× to 3× of the k off of bevacizumab or of ranibizumab, for example a k off of 0.002× of the k off of bevacizumab or of ranibizumab, a k off of 0.005× of the k off of bevacizumab or of ranibizumab, a k off of 0.0075× of the k off of bevacizumab or of ranibizumab, a k off of 0.01× of the k off of bevacizumab or of ranibizumab, a k off of 0.025× of the k off of bevacizumab or of ranibizumab, a k off of 0.05× of the k off of bevacizumab or of ranibizumab, a k off of 0.075× of the k off of bevacizumab or of ranibizumab, a k off of 0.1× of the k off of bevacizumab or of ranibizumab, a k off of 0.25× of the k off of bevacizumab or of ranibizumab, a k off of 0.5× of the k off of bevacizumab or of ranibizumab, a k off of 0.75× of the k off of bevacizumab or of ranibizumab, a k off of 0.9× of the k off of bevacizumab or of ranibizumab, a k off of 1× of the k off of bevacizumab or of ranibizumab, a k off of 1.1× of the k off of bevacizumab or of ranibizumab, a k off of 1.25× of the k off of bevacizumab or of ranibizumab, a k off of 1.5× of the k off of bevacizumab or of ranibizumab, a k off of 1.75× of the k off of bevacizumab or of ranibizumab, a k off of 4× of the k off of bevacizumab or of ranibizumab, a k off of 3× of the k off of bevacizumab or of ranibizumab, a k off of 2× of the k off of bevacizumab or of ranibizumab, a k off of 3× of the k off of bevacizumab or of ranibizumab, or a k off ranging between any pair of the foregoing values, e.g., a k off of 0.01× to 1.1× of the k off of bevacizumab or of ranibizumab, a k off of 0.05×-1.25× of the k off of bevacizumab or of ranibizumab, a k off of 0.1×-0.9× of the k off of bevacizumab or of ranibizumab, etc.
In other embodiments, an anti-VEGF antibody of the disclosure binds to VEGF with a K A (k on /k off ) ranging from 0.25× to 1000× of the K A of bevacizumab or of ranibizumab, for example a K A of 0.5× of the K A of bevacizumab or of ranibizumab, a K A of 0.75× of the K A of bevacizumab or of ranibizumab, a K A of 1× of the K A of bevacizumab or of ranibizumab, a K A of 2× of the K A of bevacizumab or of ranibizumab, a K A of 4× of the K A of bevacizumab or of ranibizumab, a K A of 10× of the K A of bevacizumab or of ranibizumab, a K A of 15× of the K A of bevacizumab or of ranibizumab, a K A of 20× of the K A of bevacizumab or of ranibizumab, a K A of 30× of the K A of bevacizumab or of ranibizumab, a K A of 40× of the K A of bevacizumab or of ranibizumab, a K A of 50× of the K A of bevacizumab or of ranibizumab, a K A of 100× of the K A of bevacizumab or of ranibizumab, a K A of 250× of the K A of bevacizumab or of ranibizumab, a K A of 500× of the K A of bevacizumab or of ranibizumab, a K A of 750× of the K A of bevacizumab or of ranibizumab, a K A of 1000× of the K A of bevacizumab or of ranibizumab or a K A ranging between any pair of the foregoing values, e.g., a K A of 0.75×-10 5× of the K A of bevacizumab or of ranibizumab, a K A of 1×-100× of the K A of bevacizumab or of ranibizumab, a K A of 10×-20× of the K A of bevacizumab or of ranibizumab, a K A of 4×-50× of the K A of bevacizumab or of ranibizumab, a K A of 2×-20× of the K A of bevacizumab or of ranibizumab, or any value or range that can be calculated from the k on and k off rates disclosed herein.
In other embodiments, an anti-VEGF antibody of the disclosure binds to VEGF a K D (k off /k on ) ranging from ranging from 0.001× to 10× of the K D of bevacizumab or of ranibizumab, for example a K D of 0.001× of the K D of bevacizumab or of ranibizumab, a K D of 0.005× of the K D of bevacizumab or of ranibizumab, a K D of 0.01× of the K D of bevacizumab or of ranibizumab, a K D of 0.05× of the K D of bevacizumab or of ranibizumab, a K D of 0.075× of the K D of bevacizumab or of ranibizumab, a K D of 0.1× of the K D of bevacizumab or of ranibizumab, a K D of 0.2× of the K D of bevacizumab or of ranibizumab, a K D of 0.3× of the K D of bevacizumab or of ranibizumab, a K D of 0.4× of the K D of bevacizumab or of ranibizumab, a K D of 0.5× of the K D of bevacizumab or of ranibizumab, a K D of 0.6× of the K D of bevacizumab or of ranibizumab, a K D of 0.7× of the K D of bevacizumab or of ranibizumab, a K D of 0.8× of the K D of bevacizumab or of ranibizumab, a K D of 0.9× of the K D of bevacizumab or of ranibizumab, a K D of 1× of the K D of bevacizumab or of ranibizumab, a K D of 1.5× of the K D of bevacizumab or of ranibizumab, a K D of 2× of the K D of bevacizumab or of ranibizumab, a K D of 4× of the K D of bevacizumab or of ranibizumab, a K D of 7.5× of the K D of bevacizumab or of ranibizumab, a K D of 10× of the K D of bevacizumab or of ranibizumab or a K D ranging between any pair of the foregoing values, e.g., a K D of 0.01×-2× of the K D of bevacizumab or of ranibizumab, a K D of 0.1×-1.5× of the K D of bevacizumab or of ranibizumab, a K D of 0.7×-4× of the K D of bevacizumab or of ranibizumab, a K D of 0.2×-2× of the K D of bevacizumab or of ranibizumab or any value or range that can be calculated from the k on and k off rates disclosed herein.
In some embodiments, an anti-VEGF antibody of the disclosure binds to VEGF and inhibits the binding of VEGF to Flt-1, Flk-1 or both, or neutralize the activity of VEGF at an IC 50 value ranging from 0.001× to 10× of the IC 50 of bevacizumab or of ranibizumab, for example an IC 50 of 0.001× of the IC 50 of bevacizumab or of ranibizumab, an IC 50 of 0.005× of the IC 50 of bevacizumab or of ranibizumab, an IC 50 of 0.01× of the IC 50 of bevacizumab or of ranibizumab, an IC 50 of 0.05× of the IC 50 of bevacizumab or of ranibizumab, an IC 50 of 0.075× of the IC 50 of bevacizumab or of ranibizumab, an IC 50 of 0.1× of the IC 50 of bevacizumab or of ranibizumab, an IC 50 of 0.2× of the IC 50 of bevacizumab or of ranibizumab, an IC 50 of 0.3× of the IC 50 of bevacizumab or of ranibizumab, an IC 50 of 0.4× of the IC 50 of bevacizumab or of ranibizumab, an IC 50 of 0.5× of the IC 50 of bevacizumab or of ranibizumab, an IC 50 of 0.6× of the IC 50 of bevacizumab or of ranibizumab, an IC 50 of 0.7× of the IC 50 of bevacizumab or of ranibizumab, an IC 50 of 0.8× of the IC 50 of bevacizumab or of ranibizumab, an IC 50 of 0.9× of the IC 50 of bevacizumab or of ranibizumab, an IC 50 of 1× of the IC 50 of bevacizumab or of ranibizumab, an IC 50 of 1.5× of the IC 50 of bevacizumab or of ranibizumab, an IC 50 of 2× of the IC 50 of bevacizumab or of ranibizumab, an IC 50 of 4× of the IC 50 of bevacizumab or of ranibizumab, an IC 50 of 7.5× of the IC 50 of bevacizumab or of ranibizumab, an IC 50 of 10× of the IC 50 of bevacizumab or of ranibizumab or an IC 50 ranging between any pair of the foregoing values, e.g., an IC 50 of 0.01×-2× of the IC 50 of bevacizumab or of ranibizumab, an IC 50 of 0.1×-1.5× of the IC 50 of bevacizumab or of ranibizumab, an IC 50 of 0.7×-4× of the IC 50 of bevacizumab or of ranibizumab, an IC 50 of 0.2×-2× of the IC 50 of bevacizumab or of ranibizumab. In certain embodiments, a single CDR substitution can result in the foregoing differences in IC 50 as compared to bevacizumab or ranibizumab, whereas an anti-VEGF antibody of the disclosure can comprise such substitution and up to 16 additional CDR substitutions as compared to bevacizumab or ranibizumab.
6.5 Reduced Immunogenicity of Anti-VEGF Antibodies
In certain aspects, the present disclosure provides anti-VEGF antibodies having reduced immunogenicity as compared to bevacizumab or ranibizumab. The present disclosure provides anti-VEGF antibodies having single or multiple amino acid substitutions in their CDRs and/or framework regions as compared to the CDRs of bevacizumab, wherein at least one substitution reduces the immunogenicity of the antibody as compared to bevacizumab or ranibizumab. In certain embodiments, the reduced immunogenicity results from one or more amino acid substitutions that result in eliminating or mitigating one or more T cell epitopes.
In certain aspects, the anti-VEGF antibodies of the disclosure having reduced immunogenicity have comparable or improved biological activity as compared to bevacizumab or ranibizumab, e.g., affinity towards VEGF or neutralization of VEGF activity. Such properties can be tested, for example, by the methods described in Section 6.3 above.
In certain embodiments, the immunogenicity of an anti-VEGF antibody of the disclosure is reduced relative to bevacizumab or ranibizumab antibody. Such antibodies generally have variant sequences relative to the heavy and/or light chain variable region in regions corresponding to SEQ ID NO:25, SEQ ID NO:62 and/or SEQ ID NO:74. The antibodies will generally have one, two or three amino acid substitutions in one, two or all three sequences corresponding to SEQ ID NO:25, SEQ ID NO:62, and SEQ ID NO:74, although up to four or five substitutions in one, two or all three regions are contemplated herein.
As used in the present disclosure, a variant with “reduced immunogenicity” refers to an anti-VEGF antibody with a variant sequence in a region corresponding to SEQ ID NO:25, SEQ ID NO:62, and/or SEQ ID NO:74 that elicits a reduced proliferative response in peripheral blood mononuclear cells as compared to a peptide of SEQ ID NO:25, SEQ ID NO:62, or SEQ ID NO:74, respectively. An exemplary proliferation assay that can be used to evaluate the proliferative response is set forth in Section 7 below. The reduced proliferative response can be reflected in terms of the percentage of responders, the stimulation index, or both.
In other embodiments, as compared to a peptide having the sequence of SEQ ID NO:25, SEQ ID NO:62, or SEQ ID NO:74, the variant sequence results in at least 25% fewer responders, in at least 30% fewer responders, in at least 35% fewer responders, in at least 40% fewer responders, in at least 45% fewer responders, in at least 50% fewer responders, in at least 60% fewer responders, in at least 65% fewer responders, in at least 70% fewer responders, in at least 75% fewer responders, in at least 80% fewer responders, in at least 85% fewer responders, in at least 90% fewer responders, in at least 95% fewer responders, 100% fewer responders, or a reduction in responders in a range between any of the foregoing values, e.g., 25%-75% fewer responders, 50%-90% fewer responders, 60%-100% fewer responders, 70%-90% fewer responders, or the like.
In other embodiments, the variant sequence results in a stimulation index that is at least 5% less, at least 10% less, at least 15% less, at least 20% less, at least 25% less, at least 30% less, at least 35% less, or at least 40% less than the stimulation index elicited by a peptide of SEQ ID NO:25, SEQ ID NO:62, or SEQ ID NO:74, respectively, or results in a stimulation index reduced by a range between any of the foregoing values as compared to a peptide of SEQ ID NO:25, SEQ ID NO:62, or SEQ ID NO:74, e.g., 5%-20% less, 10%-30% less, 25%-35% less, 30%-40% less, or the like.
Exemplary embodiments of candidate anti-VEGF antibodies with reduced immunogenicity as compared to bevacizumab or ranibizumab comprise one or more of the CDR substitutions or combinations of substitutions set forth in FIG. 6 . Optionally, anti-VEGF antibodies with reduced immunogenicity as compared to bevacizumab or ranibizumab comprise one or more additional substitutions, such as the CDR mutations in any of FIGS. 7-13 , singly or in combination.
Yet further exemplary embodiments of candidate anti-VEGF antibodies with reduced immunogenicity as compared to bevacizumab or ranibizumab comprise one or more of the CDR substitutions or combinations of substitutions set forth in FIGS. 14-16 . Some preferred embodiments of anti-VEGF antibodies with reduced immunogenicity as compared to bevacizumab or ranibizumab are provided in FIG. 19 .
6.6 Antibody Conjugates
The anti-VEGF antibodies of the disclosure include antibody conjugates that are modified, e.g., by the covalent attachment of any type of molecule to the antibody, such that covalent attachment does not interfere with binding to VEGF.
In certain aspects; an anti-VEGF antibody of the disclosure can be conjugated to an effector moiety or a label. The term “effector moiety” as used herein includes, for example, antineoplastic agents, drugs, toxins, biologically active proteins, for example enzymes, other antibody or antibody fragments, synthetic or naturally occurring polymers, nucleic acids (e.g., DNA and RNA), radionuclides, particularly radioiodide, radioisotopes, chelated metals, nanoparticles and reporter groups such as fluorescent compounds or compounds which can be detected by NMR or ESR spectroscopy.
In one example, anti-VEGF antibodies can be conjugated to an effector moiety, such as a cytotoxic agent, a radionuclide or drug moiety to modify a given biological response. The effector moiety can be a protein or polypeptide, such as, for example and without limitation, a toxin (such as abrin, ricin A, Pseudomonas exotoxin, or Diphtheria toxin), a signaling molecule (such as α-interferon, β-interferon, nerve growth factor, platelet derived growth factor or tissue plasminogen activator), a thrombotic agent or an anti-angiogenic agent (e.g., angiostatin or endostatin) or a biological response modifier such as a cytokine or growth factor (e.g., interleukin-1 (IL-I), interleukin-2 (IL-2), interleukin-6 (IL-6), granulocyte macrophage colony stimulating factor (GM-CSF), granulocyte colony stimulating factor (G-CSF), or nerve growth factor (NGF)).
In another example the effector moieties can be cytotoxins or cytotoxic agents. Examples of cytotoxins and cytotoxic agents include taxol, cytochalasin B, gramicidin D, ethidium bromide, emetine, mitomycin, etoposide, tenoposide, vincristine, vinblastine, colchicin, doxorubicin, daunorabicin, dihydroxy anthracin dione, mitoxantrone, mithramycin, actinomycin D, 1-dehydrotestosterone, glucocorticoids, procaine, tetracaine, lidocaine, propranolol, and puromycin and analogs or homologs thereof.
Effector moieties also include, but are not limited to, antimetabolites (e.g. methotrexate, 6-mercaptopurine, 6-thioguanine, cytarabine, 5-fluorouracil decarbazine), alkylating agents (e.g., mechlorethamine, thioepa chlorambucil, melphalan, carmustine (BSNU) and lomustine (CCNU), cyclothosphamide, busulfan, dibromomannitol, streptozotocin, mitomycin C5 and cis-dichlorodiamine platinum (II) (DDP) cisplatin), anthracyclines (e.g., daunorubicin (formerly daunomycin) and doxorubicin), antibiotics (e.g., dactinomycin (formerly actinomycin), bleomycin, mithramycin, anthramycin (AMC), calicheamicins or duocarmycins), and anti-mitotic agents (e.g., vincristine and vinblastine).
Other effector moieties can include radionuclides such as, but not limited to, 111 In and 90 Y, Lu 177 , Bismuth 213 , Californium 252 , Iridium 192 and Tungsten 188 /Rhenium 188 and drugs such as, but not limited to, alkylphosphocholines, topoisomerase I inhibitors, taxoids and suramin.
Techniques for conjugating such effector moieties to antibodies are well known in the art (see, e.g., Hellstrom et al., Controlled Drug Delivery, 2nd Ed., at pp. 623-53 (Robinson et al., eds., 1987)); Thorpe et al., 1982, Immunol. Rev. 62:119-58 and Dubowchik et al., 1999, Pharmacology and Therapeutics 83:67-123).
In one example, the anti-VEGF antibody or fragment thereof is fused via a covalent bond (e.g., a peptide bond), through the antibody's N-terminus or C-terminus or internally, to an amino acid sequence of another protein (or portion thereof; for example at least a 10, 20 or 50 amino acid portion of the protein). The antibody, or fragment thereof, can linked to the other protein at the N-terminus of the constant domain of the antibody. Recombinant DNA procedures can be used to create such fusions, for example as described in WO 86/01533 and EP0392745. In another example the effector molecule can increase half-life in vivo, and/or enhance the delivery of an antibody across an epithelial barrier to the immune system. Examples of suitable effector molecules of this type include polymers, albumin, albumin binding proteins or albumin binding compounds such as those described in WO 2005/117984.
In certain aspects, an anti-VEGF antibody is conjugated to a small molecule toxin. In certain exemplary embodiments, an anti-VEGF antibody of the disclosure is conjugated to a dolastatin or a dolostatin peptidic analogs or derivatives, e.g., an auristatin (U.S. Pat. Nos. 5,635,483 and 5,780,588). The dolastatin or auristatin drug moiety may be attached to the antibody through its N (amino) terminus, C (carboxyl) terminus or internally (WO 02/088172). Exemplary auristatin embodiments include the N-terminus linked monomethylauristatin drug moieties DE and DF, as disclosed in U.S. Pat. No. 7,498,298, which is hereby incorporated by reference in its entirety (disclosing, e.g., linkers and methods of preparing monomethylvaline compounds such as MMAE and MMAF conjugated to linkers).
In other exemplary embodiments, small molecule toxins include but are not limited to calicheamicin, maytansine (U.S. Pat. No. 5,208,020), trichothene, and CC1065. In one embodiment of the disclosure, the antibody is conjugated to one or more maytansine molecules (e.g., about 1 to about 10 maytansine molecules per antibody molecule). Maytansine may, for example, be converted to May-SS-Me which may be reduced to May-SH3 and reacted with an antibody (Chari et al., 1992, Cancer Research 52: 127-131) to generate a maytansinoid-antibody or maytansinoid-Fc fusion conjugate. Structural analogues of calicheamicin that can also be used include but are not limited to γ 1 1 , γ 3 1 , N-acetyl-γ 1 1 , PSAG, and θ 1 1 , (Hinman et al., 1993, Cancer Research 53:3336-3342; Lode et al., 1998, Cancer Research 58:2925-2928; U.S. Pat. No. 5,714,586; U.S. Pat. No. 5,712,374; U.S. Pat. No. 5,264,586; U.S. Pat. No. 5,773,001).
Antibodies of the disclosure can also be conjugated to liposomes for targeted delivery (See, e.g., Park et al., 1997, Adv. Pharmacol. 40:399-435; Marty & Schwendener, 2004, Methods in Molecular Medicine 109:389-401).
In one example antibodies of the present disclosure can be attached to poly(ethyleneglycol) (PEG) moieties. In one particular example the antibody is an antibody fragment and the PEG moieties can be attached through any available amino acid side-chain or terminal amino acid functional group located in the antibody fragment, for example any free amino, imino, thiol, hydroxyl or carboxyl group. Such amino acids can occur naturally in the antibody fragment or can be engineered into the fragment using recombinant DNA methods. See for example U.S. Pat. No. 5,219,996. Multiple sites can be used to attach two or more PEG molecules. PEG moieties can be covalently linked through a thiol group of at least one cysteine residue located in the antibody fragment. Where a thiol group is used as the point of attachment, appropriately activated effector moieties, for example thiol selective derivatives such as maleimides and cysteine derivatives, can be used.
In a specific example, an anti-VEGF antibody conjugate is a modified Fab′ fragment which is PEGylated, i.e., has PEG (poly(ethyleneglycol)) covalently attached thereto, e.g., according to the method disclosed in EP0948544. See also Poly(ethyleneglycol) Chemistry, Biotechnical and Biomedical Applications, (J. Milton Harris (ed.), Plenum Press, New York, 1992); Poly(ethyleneglycol) Chemistry and Biological Applications, (J. Milton Harris and S. Zalipsky, eds., American Chemical Society, Washington D.C., 1997); and Bioconjugation Protein Coupling Techniques for the Biomedical Sciences, (M. Aslam and A. Dent, eds., Grove Publishers, New York, 1998); and Chapman, 2002, Advanced Drug Delivery Reviews 54:531-545. PEG can be attached to a cysteine in the hinge region. In one example, a PEG-modified Fab′ fragment has a maleimide group covalently linked to a single thiol group in a modified hinge region. A lysine residue can be covalently linked to the maleimide group and to each of the amine groups on the lysine residue can be attached a methoxypoly(ethyleneglycol) polymer having a molecular weight of approximately 20,000 Da. The total molecular weight of the PEG attached to the Fab′ fragment can therefore be approximately 40,000 Da.
The word “label” when used herein refers to a detectable compound or composition which can be conjugated directly or indirectly to an anti-VEGF antibody of the disclosure. The label can itself be detectable (e.g., radioisotope labels or fluorescent labels) or, in the case of an enzymatic label, can catalyze chemical alteration of a substrate compound or composition which is detectable. Useful fluorescent moieties include, but are not limited to, fluorescein, fluorescein isothiocyanate, rhodamine, 5-dimethylamine-1-napthalenesulfonyl chloride, phycoerythrin and the like. Useful enzymatic labels include, but are not limited to, alkaline phosphatase, horseradish peroxidase, glucose oxidase and the like.
Additional anti-VEGF antibody conjugates that are useful for, inter alia, diagnostic purposes, are described in Section 6.7 below.
6.7 Diagnostic Uses of Anti-VEGF Antibodies
The anti-VEGF antibodies of the disclosure, including those antibodies that have been modified, e.g., by biotinylation, horseradish peroxidase, or any other detectable moiety (including those described in Section 6.6), can be advantageously used for diagnostic purposes.
In particular, the anti-VEGF antibodies can be used, for example, but not limited to, to purify or detect VEGF, including both in vitro and in vivo diagnostic methods. For example, the antibodies have use in immunoassays for qualitatively and quantitatively measuring levels of VEGF in biological samples. See, e.g., Harlow et al., Antibodies: A Laboratory Manual, Second Edition (Cold Spring Harbor Laboratory Press, 1988), which is incorporated by reference herein in its entirety.
The present disclosure further encompasses antibodies or fragments thereof conjugated to a diagnostic agent. The antibodies can be used diagnostically, for example, to detect expression of a target of interest in specific cells, tissues, or serum; or to monitor the development or progression of an immunologic response as part of a clinical testing procedure to, e.g., determine the efficacy of a given treatment regimen. Detection can be facilitated by coupling the antibody to a detectable substance. Examples of detectable substances include various enzymes, prosthetic groups, fluorescent materials, luminescent materials, bioluminescent materials, radioactive materials, positron emitting metals using various positron emission tomographies, and nonradioactive paramagnetic metal ions. The detectable substance can be coupled or conjugated either directly to the antibody (or fragment thereof) or indirectly, through an intermediate (such as, for example, a linker known in the art) using techniques known in the art. Examples of enzymatic labels include luciferases (e.g., firefly luciferase and bacterial luciferase; U.S. Pat. No. 4,737,456), luciferin, 2,3-dihydrophthalazinediones, malate dehydrogenase, urease, peroxidase such as horseradish peroxidase (HRPO), alkaline phosphatase, (3-galactosidase, acetylcholinesterase, glucoamylase, lysozyme, saccharide oxidases (e.g., glucose oxidase, galactose oxidase, and glucose-6-phosphate dehydrogenase), heterocyclic oxidases (such as uricase and xanthine oxidase), lactoperoxidase, microperoxidase, and the like. Examples of suitable prosthetic group complexes include streptavidin/biotin and avidin/biotin; examples of suitable fluorescent materials include umbelliferone, fluorescein, fluorescein isothiocyanate, rhodamine, dichlorotriazinylamine fluorescein, dansyl chloride or phycoerythrin; an example of a luminescent material includes luminol; examples of bioluminescent materials include luciferase, luciferin, and aequorin; and examples of suitable radioactive material include 125 I, 131 I, 111 In or 99 Tc.
The disclosure provides for the detection of expression of VEGF, comprising contacting a biological sample (cells, tissue, or body fluid of an individual) using one or more anti-VEGF antibodies of the disclosure (optionally conjugated to detectable moiety), and detecting whether or not the sample is positive for VEGF expression, or whether the sample has altered (e.g., reduced or increased) expression as compared to a control sample.
Diseases that can be diagnosed using the present methods include, but are not limited to, the diseases described herein. In certain embodiments, the tissue or body fluid is peripheral blood, peripheral blood leukocytes, biopsy tissues such as lung or skin biopsies, and tissue.
6.8 Therapeutic Methods Using Anti-Vegf Antibodies
6.8.1 Clinical Benefits
The anti-VEGF antibodies of the disclosure can be used to treat various neoplasms or non-neoplastic conditions characterized by pathological angiogenesis.
The antibodies of the disclosure are useful in the treatment of tumors in which angiogenesis plays an important role in tumor growth, including cancers and benign tumors. Examples of cancer to be treated herein include, but are not limited to, carcinoma, lymphoma, blastoma, sarcoma, and leukemia. More particular examples of such cancers include squamous cell cancer, lung cancer (including small-cell lung cancer, non-small cell lung cancer, adenocarcinoma of the lung, and squamous carcinoma of the lung), cancer of the peritoneum, hepatocellular cancer, gastric or stomach cancer (including gastrointestinal cancer), pancreatic cancer, glioblastoma, cervical cancer, ovarian cancer, liver cancer, bladder cancer, hepatoma, breast cancer, colon cancer, colorectal cancer, endometrial or uterine carcinoma, salivary gland carcinoma, kidney or renal cancer, liver cancer, prostate cancer, vulval cancer, thyroid cancer, hepatic carcinoma and various types of head and neck cancer, as well as B-cell lymphoma (including low grade/follicular non-Hodgkin's lymphoma (NHL); small lymphocytic (SL) NHL; intermediate grade/follicular NHL; intermediate grade diffuse NHL; high grade immunoblastic NHL; high grade lymphoblastic NHL; high grade small non-cleaved cell NHL; bulky disease NHL; mantle cell lymphoma; AIDS-related lymphoma; and Waldenstrom's Macroglobulinemia); chronic lymphocytic leukemia (CLL); acute lymphoblastic leukemia (ALL); Hairy cell leukemia; chronic myeloblastic leukemia; and post-transplant lymphoproliferative disorder (PTLD), as well as abnormal vascular proliferation associated with phakomatoses, edema (such as that associated with brain tumors), and Meigs' syndrome. More particularly, cancers that are amenable to treatment by the antibodies of the disclosure include breast cancer, colorectal cancer, rectal cancer, non-small cell lung cancer, non-Hodgkins lymphoma (NHL), renal cell cancer, prostate cancer, liver cancer, pancreatic cancer, soft-tissue sarcoma, kaposi's sarcoma, carcinoid carcinoma, head and neck cancer, melanoma, ovarian cancer, mesothelioma, and multiple myeloma. In some embodiments, the anti-VEGF antibodies of the disclosure are used to treat colorectal cancer in a human patient.
The present disclosure encompasses anti-angiogenic therapy, a cancer treatment strategy aimed at inhibiting the development of tumor blood vessels required for providing nutrients to support tumor growth. Because angiogenesis is involved in both primary tumor growth and metastasis, the antiangiogenic treatment provided by the disclosure is capable of inhibiting the neoplastic growth of tumor at the primary site as well as preventing metastasis of tumors at the secondary sites.
Non-neoplastic conditions that are amenable to treatment with the antibodies of the disclosure include retinal conditions (e.g., age-related macular degeneration (“AMD”), edema following retinal vein occlusion (“RVO”), and diabetic macular edema (“DME”)) and immune and inflammatory diseases (e.g., rheumatoid arthritis, psoriasis, atherosclerosis, diabetic and other proliferative retinopathies including retinopathy of prematurity, retrolental fibroplasia, neovascular glaucoma, age-related macular degeneration, thyroid hyperplasias (including Grave's disease), corneal and other tissue transplantation, chronic inflammation, lung inflammation, nephrotic syndrome, preeclampsia, ascites, pericardial effusion (such as that associated with pericarditis), and pleural effusion).
Accordingly, the present disclosure provides methods of treating any of the foregoing diseases in a patient in need thereof, comprising: administering to the patient an anti-VEGF antibody of the disclosure. Optionally, said administration is repeated, e.g., after one day, two days, three days, five days, one week, two weeks, three weeks, one month, five weeks, six weeks, seven weeks, eight weeks, two months or three months. The repeated administration can be at the same dose or at a different dose. The administration can be repeated once, twice, three times, four times, five times, six times, seven times, eight times, nine times, ten times, or more. For example, according to certain dosage regimens a patient receives anti-VEGF therapy for a prolonged period of time, e.g., 6 months, 1 year or more. The amount of anti-VEGF antibody administered to the patient is in certain embodiments a therapeutically effective amount. As used herein, a “therapeutically effective” amount of VEGF antibody can be administered as a single dose or over the course of a therapeutic regimen, e.g., over the course of a week, two weeks, three weeks, one month, three months, six months, one year, or longer. Exemplary therapeutic regimens are described in Section 6.11 below.
According to the present disclosure, treatment of a disease encompasses the treatment of patients already diagnosed as having any form of the disease at any clinical stage or manifestation; the delay of the onset or evolution or aggravation or deterioration of the symptoms or signs of the disease; and/or preventing and/or reducing the severity of the disease.
A “subject” or “patient” to whom the anti-VEGF antibody of the disclosure is administered is preferably a mammal such as a non-primate (e.g., cow, pig, horse, cat, dog, rat, etc.) or a primate (e.g., monkey or human). In certain embodiments, the subject or patient is a human. In certain aspects, the human is a pediatric patient. In other aspects, the human is an adult patient.
6.9 Pharmaceutical Compositions and Routes of Administration
Compositions comprising an anti-VEGF antibody of the disclosure and, optionally one or more additional therapeutic agents, such as the combination therapeutic agents described in Section 6.10 below, are provided herein. The compositions will usually be supplied as part of a sterile, pharmaceutical composition that will normally include a pharmaceutically acceptable carrier. This composition can be in any suitable form (depending upon the desired method of administering it to a patient).
The anti-VEGF antibodies of the disclosure can be administered to a patient by a variety of routes such as orally, transdermally, subcutaneously, intranasally, intravenously, intramuscularly, intraocularly, topically, intrathecally and intracerebroventricularly. The most suitable route for administration in any given case will depend on the particular antibody, the subject, and the nature and severity of the disease and the physical condition of the subject.
For treatment of indications other than retinal diseases, the effective dose of an anti-VEGF antibody of the disclosure can range from about 0.1 to about 75 mg/kg per single (e.g., bolus) administration, multiple administrations or continuous administration, or to achieve a serum concentration of 0.01-5000 μg/mL serum concentration per single (e.g., bolus) administration, multiple administrations or continuous administration, or any effective range or value therein depending on the condition being treated, the route of administration and the age, weight and condition of the subject. In certain embodiments, e.g. for the treatment of cancer, each dose can range from about 0.1 mg to about 50 mg per kilogram of body weight, for example from about 3 mg to about 25 mg per kilogram body weight. The antibody can be formulated as an aqueous solution and administered by subcutaneous injection.
For treatment of retinal conditions (e.g., age-related macular degeneration (“AMD”), macular edema following retinal vein occlusion (“RVO”), and diabetic macular edema (“DME”)), the dosage suitably results in aqueous humor concentration of the anti-VEGF antibody the injected eye of 1-50 μg/mL. For treatment of AMD, each dose can be from 0.1 mg to about 1 mg, for example from about 0.25 to about 0.5 mg. The antibody can be formulated as an aqueous solution and administered by intravitreal injection.
Pharmaceutical compositions can be conveniently presented in unit dose forms containing a predetermined amount of an anti-VEGF antibody of the disclosure per dose. Such a unit can contain for example but without limitation 0.1 mg to 5 g, for example 1 mg to 1 g, or 10 to 50 mg. Pharmaceutically acceptable carriers for use in the disclosure can take a wide variety of forms depending, e.g., on the condition to be treated or route of administration.
Therapeutic formulations of the anti-VEGF antibodies of the disclosure can be prepared for storage as lyophilized formulations or aqueous solutions by mixing the antibody having the desired degree of purity with optional pharmaceutically-acceptable carriers, excipients or stabilizers typically employed in the art (all of which are referred to herein as “carriers”), i.e., buffering agents, stabilizing agents, preservatives, isotonifiers, non-ionic detergents, antioxidants, and other miscellaneous additives. See, Remington's Pharmaceutical Sciences, 16th edition (Osol, ed. 1980). Such additives must be nontoxic to the recipients at the dosages and concentrations employed.
Buffering agents help to maintain the pH in the range which approximates physiological conditions. They can be present at concentration ranging from about 2 mM to about 50 mM. Suitable buffering agents for use with the present disclosure include both organic and inorganic acids and salts thereof such as citrate buffers (e.g., monosodium citrate-disodium citrate mixture, citric acid-trisodium citrate mixture, citric acid-monosodium citrate mixture, etc.), succinate buffers (e.g., succinic acid-monosodium succinate mixture, succinic acid-sodium hydroxide mixture, succinic acid disodium succinate mixture, etc.), tartrate buffers (e.g., tartaric acid-sodium tartrate mixture, tartaric acid-potassium tartrate mixture, tartaric acid-sodium hydroxide mixture, etc.), fumarate buffers (e.g., fumaric acid-monosodium fumarate mixture, fumaric acid-disodium fumarate mixture, monosodium fumarate-disodium fumarate mixture, etc.), gluconate buffers (e.g., gluconic acid-sodium glyconate mixture, gluconic acid-sodium hydroxide mixture, gluconic acid-potassium glyuconate mixture, etc.), oxalate buffer (e.g., oxalic acid-sodium oxalate mixture, oxalic acid-sodium hydroxide mixture, oxalic acid-potassium oxalate mixture, etc.), lactate buffers (e.g., lactic acid-sodium lactate mixture, lactic acid-sodium hydroxide mixture, lactic acid-potassium lactate mixture, etc.) and acetate buffers (e.g., acetic acid-sodium acetate mixture, acetic acid-sodium hydroxide mixture, etc.). Additionally, phosphate buffers, histidine buffers and trimethylamine salts such as Tris can be used.
Preservatives can be added to retard microbial growth, and can be added in amounts ranging from 0.2%-1% (w/v). Suitable preservatives for use with the present disclosure include phenol, benzyl alcohol, meta-cresol, methyl paraben, propyl paraben, octadecyldimethylbenzyl ammonium chloride, benzalconium halides (e.g., chloride, bromide, and iodide), hexamethonium chloride, and alkyl parabens such as methyl or propyl paraben, catechol, resorcinol, cyclohexanol, and 3-pentanol. Isotonicifiers sometimes known as “stabilizers” can be added to ensure isotonicity of liquid compositions of the present disclosure and include polhydric sugar alcohols, for example trihydric or higher sugar alcohols, such as glycerin, erythritol, arabitol, xylitol, sorbitol and mannitol. Stabilizers refer to a broad category of excipients which can range in function from a bulking agent to an additive which solubilizes the therapeutic agent or helps to prevent denaturation or adherence to the container wall. Typical stabilizers can be polyhydric sugar alcohols (enumerated above); amino acids such as arginine, lysine, glycine, glutamine, asparagine, histidine, alanine, ornithine, L-leucine, 2-phenylalanine, glutamic acid, threonine, etc., organic sugars or sugar alcohols, such as lactose, trehalose, stachyose, mannitol, sorbitol, xylitol, ribitol, myoinisitol, galactitol, glycerol and the like, including cyclitols such as inositol; polyethylene glycol; amino acid polymers; sulfur containing reducing agents, such as urea, glutathione, thioctic acid, sodium thioglycolate, thioglycerol, α-monothioglycerol and sodium thio sulfate; low molecular weight polypeptides (e.g., peptides of 10 residues or fewer); proteins such as human serum albumin, bovine serum albumin, gelatin or immunoglobulins; hydrophylic polymers, such as polyvinylpyrrolidone monosaccharides, such as xylose, mannose, fructose, glucose; disaccharides such as lactose, maltose, sucrose and trisaccacharides such as raffinose; and polysaccharides such as dextran. Stabilizers can be present in the range from 0.1 to 10,000 weights per part of weight active protein.
Non-ionic surfactants or detergents (also known as “wetting agents”) can be added to help solubilize the therapeutic agent as well as to protect the therapeutic protein against agitation-induced aggregation, which also permits the formulation to be exposed to shear surface stressed without causing denaturation of the protein. Suitable non-ionic surfactants include polysorbates (20, 80, etc.), polyoxamers (184, 188 etc.), Pluronic polyols, polyoxyethylene sorbitan monoethers (TWEEN®-20, TWEEN®-80, etc.). Non-ionic surfactants can be present in a range of about 0.05 mg/mL to about 1.0 mg/mL, for example about 0.07 mg/mL to about 0.2 mg/mL.
Additional miscellaneous excipients include bulking agents (e.g., starch), chelating agents (e.g., EDTA), antioxidants (e.g., ascorbic acid, methionine, vitamin E), and cosolvents.
The formulation herein can also contain a combination therapeutic agent in addition to the anti-VEGF antibody of the disclosure. Examples of suitable combination therapeutic agents are provided in Section 6.10 below.
The dosing schedule for subcutaneous administration can vary from once every six months to daily depending on a number of clinical factors, including the type of disease, severity of disease, and the patient's sensitivity to the anti-VEGF antibody.
The dosage of an anti-VEGF antibody of the disclosure to be administered of will vary according to the particular antibody, the type of disease (e.g., cancer, inflammatory, etc.), the subject, and the severity of the disease, the physical condition of the subject, the therapeutic regimen (e.g., whether a combination therapeutic agent is used), and the selected route of administration; the appropriate dosage can be readily determined by a person skilled in the art.
It will be recognized by one of skill in the art that the optimal quantity and spacing of individual dosages of an anti-VEGF antibody of the disclosure will be determined by the nature and extent of the condition being treated, the form, route and site of administration, and the age and condition of the particular subject being treated, and that a physician will ultimately determine appropriate dosages to be used. This dosage can be repeated as often as appropriate. If side effects develop the amount and/or frequency of the dosage can be altered or reduced, in accordance with normal clinical practice.
6.10 Combination Therapy
Described below are combinatorial methods in which the anti-VEGF antibodies of the disclosure can be utilized. The combinatorial methods of the disclosure involve the administration of at least two agents to a patient, the first of which is an anti-VEGF antibody of the disclosure, and the second of which is a combination therapeutic agent. The anti-VEGF antibody and the combination therapeutic agent can be administered simultaneously, sequentially or separately.
The combinatorial therapy methods of the present disclosure can result in a greater than additive effect, providing therapeutic benefits where neither the anti-VEGF antibody or combination therapeutic agent administered in an amount that is alone therapeutically effective.
In the present methods, the anti-VEGF antibody of the disclosure and the combination therapeutic agent can be administered concurrently, either simultaneously or successively. As used herein, the anti-VEGF antibody of the disclosure and the combination therapeutic agent are said to be administered successively if they are administered to the patient on the same day, for example during the same patient visit. Successive administration can occur 1, 2, 3, 4, 5, 6, 7 or 8 hours apart. In contrast, the anti-VEGF antibody of the disclosure and the combination therapeutic agent are said to be administered separately if they are administered to the patient on the different days, for example, the anti-VEGF antibody of the disclosure and the combination therapeutic agent can be administered at a 1-day, 2-day or 3-day, one-week, 2-week or monthly intervals. In the methods of the present disclosure, administration of the anti-VEGF antibody of the disclosure can precede or follow administration of the combination therapeutic agent.
As a non-limiting example, the anti-VEGF antibody of the disclosure and combination therapeutic agent can be administered concurrently for a period of time, followed by a second period of time in which the administration of the anti-VEGF antibody of the disclosure and the combination therapeutic agent is alternated.
Because of the potentially synergistic effects of administering an anti-VEGF antibody of the disclosure and a combination therapeutic agent, such agents can be administered in amounts that, if one or both of the agents is administered alone, is/are not therapeutically effective.
In certain aspects, the combination therapeutic agent is an anti-angiogenic agent, an anti-rheumatic drug, an anti-inflammatory agent, a chemotherapeutic agent, a radiotherapeutic, an immunosuppressive agent, or a cytotoxic drug.
It is contemplated that when used to treat various diseases, the anti-VEGF antibodies of the disclosure can be combined with other therapeutic agents suitable for the same or similar diseases. When used for treating cancer, antibodies of the present disclosure may be used in combination with conventional cancer therapies, such as surgery, radiotherapy, chemotherapy or combinations thereof.
In some other aspects, other therapeutic agents useful for combination tumor therapy with the antibody of the disclosure include antagonists, e.g., antibodies, of other factors that are involved in tumor growth, such as EGFR, ErbB2 (also known as Her2), ErbB3, ErbB4, or TNF-α.
Sometimes, for treatment of cancers and immune diseases, it may be beneficial to also administer one or more cytokines to the patient. In a preferred embodiment, the VEGF antibody is co-administered with a growth inhibitory agent.
Suitable dosages for the growth inhibitory agent are those presently used and may be lowered due to the combined action (synergy) of the growth inhibitory agent and anti-VEGF antibody.
For treatment of cancers, immune diseases and retinal diseases, anti-inflammatory agents can suitably be used in combination with the anti-VEGF antibodies of the disclosure. Anti-inflammatory agents include, but are not limited to, acetaminophen, diphenhydramine, meperidine, dexamethasone, pentasa, mesalazine, asacol, codeine phosphate, benorylate, fenbufen, naprosyn, diclofenac, etodolac and indomethacin, aspirin and ibuprofen.
For treatment of cancers, chemotherapeutic agents can suitably be used in combination with the anti-VEGF antibodies of the disclosure. Chemotherapeutic agents include, but are not limited to, radioactive molecules, toxins, also referred to as cytotoxins or cytotoxic agents, which includes any agent that is detrimental to the viability of cells, agents, and liposomes or other vesicles containing chemotherapeutic compounds. Examples of suitable chemotherapeutic agents include but are not limited to 1-dehydrotestosterone, 5-fluorouracil decarbazine, 6-mercaptopurine, 6-thioguanine, actinomycin D, adriamycin, aldesleukin, an anti-α5β1 integrin antibody, alkylating agents, allopurinol sodium, altretamine, amifostine, anastrozole, anthramycin (AMC)), anti-mitotic agents, cis-dichlorodiamine platinum (II) (DDP) cisplatin, diamino dichloro platinum, anthracyclines, antibiotics, antimetabolites, asparaginase, BCG live (intravesical), betamethasone sodium phosphate and betamethasone acetate, bicalutamide, bleomycin sulfate, busulfan, calcium leucouorin, calicheamicin, capecitabine, carboplatin, lomustine (CCNU), carmustine (BSNU), Chlorambucil, Cisplatin, Cladribine, Colchicin, conjugated estrogens, Cyclophosphamide, Cyclothosphamide, Cytarabine, Cytarabine, cytochalasin B, Cytoxan, Dacarbazine, Dactinomycin, dactinomycin (formerly actinomycin), daunirubicin HCL, daunorucbicin citrate, denileukin diftitox, Dexrazoxane, Dibromomannitol, dihydroxy anthracin dione, Docetaxel, dolasetron mesylate, doxorubicin HCL, dronabinol, E. coli L-asparaginase, eolociximab, emetine, epoetin-α, Erwinia L-asparaginase, esterified estrogens, estradiol, estramustine phosphate sodium, ethidium bromide, ethinyl estradiol, etidronate, etoposide citrororum factor, etoposide phosphate, filgrastim, floxuridine, fluconazole, fludarabine phosphate, fluorouracil, flutamide, folinic acid, gemcitabine HCL, glucocorticoids, goserelin acetate, gramicidin D, granisetron HCL, hydroxyurea, idarubicin HCL, ifosfamide, interferon α-2b, irinotecan HCL, letrozole, leucovorin calcium, leuprolide acetate, levamisole HCL, lidocaine, lomustine, maytansinoid, mechlorethamine HCL, medroxyprogesterone acetate, megestrol acetate, melphalan HCL, mercaptipurine, mesna, methotrexate, methyltestosterone, mithramycin, mitomycin C, mitotane, mitoxantrone, nilutamide, octreotide acetate, ondansetron HCL, paclitaxel, pamidronate disodium, pentostatin, pilocarpine HCL, plimycin, polifeprosan 20 with carmustine implant, porfimer sodium, procaine, procarbazine HCL, propranolol, rituximab, sargramostim, streptozotocin, tamoxifen, taxol, teniposide, tenoposide, testolactone, tetracaine, thioepa chlorambucil, thioguanine, thiotepa, topotecan HCL, toremifene citrate, trastuzumab, tretinoin, valrubicin, vinblastine sulfate, vincristine sulfate, and vinorelbine tartrate.
Any anti-angiogenic agent can be used in conjunction with the anti-VEGF antibodies of the disclosure, including those listed by Carmeliet and Jain, 2000, Nature 407:249-257. In certain embodiments, the anti-angiogenic agent is another VEGF antagonist or a VEGF receptor antagonist such as VEGF variants, soluble VEGF receptor fragments, aptamers capable of blocking VEGF or VEGFR, neutralizing anti-VEGFR antibodies, low molecule weight inhibitors of VEGFR tyrosine kinases and any combinations thereof. Alternatively, or in addition, two or more anti-VEGF antibodies may be co-administered to the patient.
In certain embodiments, hormone therapy can be used in conjunction with anti-VEGF antibodies of the disclosure. In some embodiments, the hormone therapy includes one or more agents that inhibit estrogen and/or progesterone from promoting cancer cell growth, e.g., a selective estrogen-receptor modulator such as tamoxifen, an aromatase inhibitor such as anastrozole (Arimidex®) or letrozole (Femara), an aromatase inactivator such as exemestane (Aromasin®), or an agent that inhibits estrogen production such as goserelin (Zoladex). In other embodiments, the hormone therapy is one or more agents that inhibit production of hormones from the ovaries.
In some aspects, an anti-VEGF antibody can be used in conjunction with a small molecule protein tyrosine kinase (PTK) inhibitor. In some embodiments, the PTK inhibitor is specific for a VEGF receptor tyrosine kinase. In other embodiments, the PTK inhibitor binds to more than one of the VEGF receptor family of tyrosine kinases (e.g., VEGFR-1, VEGFR-2). In other embodiments, protein tyrosine kinase inhibitors useful in the compositions and methods of the invention include PTK inhibitors that do not bind selectively to the VEGF family of receptor tyrosine kinases, but also bind to the tyrosine kinase domains of other families of proteins such as HER2, HER3, HER4, PDGFR, and/or Raf.
In some embodiments, the tyrosine kinase is a receptor tyrosine kinase, i.e., is an intra-cellular domain of a larger protein that has an extra-cellular ligand binding domain and is activated by the binding of one or more ligands. In certain embodiments, the protein tyrosine kinase is a non-receptor tyrosine kinase. PTK inhibitors for use in the methods of the present disclosure include, but are not limited to, gefitinib (ZD-1839, Iressa®), erlotinib (OSI-1774, Tarceva™), canertinib (CI-1033), vandetanib (ZD6474, Zactima®), tyrphostin AG-825 (CAS 149092-50-2), lapatinib (GW-572016), sorafenib (BAY43-9006), AG-494 (CAS 133550-35-3), RG-13022 (CAS 149286-90-8), RG-14620 (CAS 136831-49-7), BIBW 2992 (Tovok), tyrphostin 9 (CAS 136831-49-7), tyrphostin 23 (CAS 118409-57-7), tyrphostin 25 (CAS 118409-58-8), tyrphostin 46 (CAS 122520-85-8), tyrphostin 47 (CAS 122520-86-9), tyrphostin 53 (CAS 122520-90-5), butein (1-(2,4-dihydroxyphenyl)-3-(3,4-dihydroxyphenyl)-2-propen-1-one 2′,3,4,4′-Tetrahydroxychalcone; CAS 487-52-5), curcumin ((E,E)-1,7-bis(4-Hydroxy-3-methoxyphenyl)-1,6-heptadiene-3,5-dione; CAS 458-37-7), N4-(1-Benzyl-1H-indazol-5-yl)-N6,N6-dimethyl-pyrido-[3,4-d]-pyrimidine-4,6-diamine (202272-68-2), AG-1478, AG-879, Cyclopropanecarboxylic acid-(3-(6-(3-trifluoromethyl-phenylamino)-pyrimidin-4-ylamino)-phenyl)-amide (CAS 879127-07-8), N8-(3-Chloro-4-fluorophenyl)-N2-(1-methylpiperidin-4-yl)-pyrimido[5,4-d]pyrimidine-2,8-diamine, 2HCl (CAS 196612-93-8), 4-(4-Benzyloxyanilino)-6,7-dimethoxyquinazoline (CAS 179248-61-4), N-(4-((3-Chloro-4-fluorophenyl)amino)pyrido[3,4-d]pyrimidin-6-yl)2-butynamide (CAS 881001-19-0), EKB-569, HKI-272, and HKI-357.
In a specific embodiment, an anti-VEGF antibody of the disclosure is used in combination with intravenous 5-fluorouracil-based chemotherapy. This combination is suitable for, inter alia, first- or second-line treatment of patients with metastatic carcinoma of the colon or rectum.
In another specific embodiment, an anti-VEGF antibody of the disclosure is used in combination with carboplatin and paclitaxel. This combination is suitable for, inter alia, first-line treatment of patients with unresectable, locally advanced, recurrent or metastatic non-squamous, non-small cell lung cancer.
In yet another specific embodiment, an anti-VEGF antibody of the disclosure is used in combination with paclitaxel. This combination is suitable for, inter alia, treatment of patients who have not received chemotherapy for metastatic HER2-negative breast cancer.
For treatment of retinal diseases, the anti-VEGF antibodies of the disclosure can be used in combination with E10030, an anti-platelet-derived growth factor (PDGF) pegylated aptamer; with ARC 1905, a pegylated aptamer targeting the C5 component of the complement cascade; and volociximab, a monoclonal antibody targeting the α5β1 integrin transmembrane receptor; photodynamic therapy with Visudyne® (PDT); or Macugen®, an aptamer (pegaptanib sodium).
6.11 Therapeutic Regimens
The present disclosure provides therapeutic regimens involving the administration of the anti-VEGF antibodies of the disclosure. The therapeutic regimen will vary depending on the patient's age, weight, and disease condition. The therapeutic regimen can continue for 2 weeks to indefinitely. In specific embodiments, the therapeutic regimen is continued for 2 weeks to 6 months, from 3 months to 5 years, from 6 months to 1 or 2 years, from 8 months to 18 months, or the like. The therapeutic regimen can be a non-variable dose regimen or a multiple-variable dose regimen.
For the dosage exemplary regimens described below, the anti-VEGF antibody can be administered as a sterile, preservative-free solution for subcutaneous administration.
For treatment of metastatic colorectal cancer, an anti-VEGF antibody of the disclosure is administered intravenously at a dose of 0.5-15 mg/kg every 2 weeks with bolus-IFL (irinotecan, 5-fluorouracil and leucovorin regimen). In specific embodiments, the dose is 1-4 mg/kg, 2-6 mg/kg, 0.5-3 mg/kg, 1-10 mg/kg, 3-4.8 mg/kg or 1-4.5 mg/kg every two weeks with bolus-IFL.
In another embodiment for treatment of metastatic colorectal cancer, an anti-VEGF antibody of the disclosure is administered intravenously at a dose of 1-30 mg/kg every 2 weeks with FOLFOX4 (oxaliplatin, leucovorin, and fluorouracil regimen). In specific embodiments, the dose is 2-9 mg/kg, 3-12 mg/kg, 1-7.5 mg/kg, 2-20 mg/kg, 6-9.75 mg/kg or 4-9.5 mg/kg every two weeks with FOLFOX4.
For treatment of non-squamous non-small cell lung cancer, an anti-VEGF antibody of the disclosure is administered intravenously at a dose of 2-40 mg/kg every three weeks with carboplatin/paclitaxel. In specific embodiments, the dose is 5-14 mg/kg, 4-20 mg/kg, 10-17.5 mg/kg, 7-14 mg/kg, 10-30 mg/kg or 3-30 mg/kg every three weeks with carboplatin/paclitaxel.
For treatment of metastatic breast cancer, an anti-VEGF antibody of the disclosure is administered intravenously at a dose of 0.5-20 mg/kg every two weeks with paclitaxel. In specific embodiments, the dose is 1-4 mg/kg, 2-6 mg/kg, 0.5-3 mg/kg, 1-10 mg/kg, 3-4.8 mg/kg or 1-4.5 mg/kg every two weeks with paclitaxel.
For treatment of metastatic breast cancer, an anti-VEGF antibody of the disclosure is administered intravenously at a dose of 0.5-20 mg/kg every two weeks as monotherapy. In specific embodiments, the dose is 1-4 mg/kg, 2-6 mg/kg, 0.5-3 mg/kg, 1-10 mg/kg, 3-4.8 mg/kg or 1-4.5 mg/kg every two weeks as monotherapy.
For treatment of retinal conditions (e.g., age-related macular degeneration (“AMD”), macular edema following retinal vein occlusion (“RVO”), or diabetic macular edema (“DME”)), an anti-VEGF antibody of the disclosure is administered at a dose of 0.1-1 mg by intravitreal injection once a month (approximately 28 days). In specific embodiments, the dose is 0.1-0.4 mg, 0.2-0.6 mg, 0.1-0.25 mg, 0.25-0.5 mg, 0.25-0.75 mg, or 0.3-0.45 mg by intravitreal injection once a month (approximately 28 days). In a specific embodiment, a patient treated with an anti-VEGF antibody of the disclosure has wet AMD. In another specific embodiment, a patient has dry AMD. In yet another embodiment, a patient has RVO. In yet another embodiment, a patient has DME.
6.12 Diagnostic and Pharmaceutical Kits
Encompassed by the present disclosure are pharmaceutical kits containing the anti-VEGF antibodies (including antibody conjugates) of the disclosure. The pharmaceutical kit is a package comprising the anti-VEGF antibody of the disclosure (e.g., either in lyophilized form or as an aqueous solution) and one or more of the following:
A combination therapeutic agent, for example as described in Section 6.10 above; A device for administering the anti-VEGF antibody, for example a pen, needle and/or syringe; and Pharmaceutical grade water or buffer to resuspend the antibody if the antibody is in lyophilized form.

In certain aspects, each unit dose of the anti-VEGF antibody is packaged separately, and a kit can contain one or more unit doses (e.g., two unit doses, three unit doses, four unit doses, five unit doses, eight unit doses, ten unit doses, or more). In a specific embodiment, the one or more unit doses are each housed in a syringe or pen.
Diagnostic kits containing the anti-VEGF antibodies (including antibody conjugates) of the disclosure are also encompassed herein. The diagnostic kit is a package comprising the anti-VEGF antibody of the disclosure (e.g., either in lyophilized form or as an aqueous solution) and one or more reagents useful for performing a diagnostic assay. Where the anti-VEGF antibody is labeled with an enzyme, the kit can include substrates and cofactors required by the enzyme (e.g., a substrate precursor which provides the detectable chromophore or fluorophore). In addition, other additives can be included, such as stabilizers, buffers (e.g., a block buffer or lysis buffer), and the like. In certain embodiments, the anti-VEGF antibody included in a diagnostic kit is immobilized on a solid surface, or a solid surface (e.g., a slide) on which the antibody can be immobilized is included in the kit. The relative amounts of the various reagents can be varied widely to provide for concentrations in solution of the reagents which substantially optimize the sensitivity of the assay. In a specific embodiment, the antibody and one or more reagents can be provided (individually or combined) as dry powders, usually lyophilized, including excipients which on dissolution will provide a reagent solution having the appropriate concentration.
7. Example 1: Identification of T-Cell Epitopes of Bevacizumab
7.1 Materials & Methods
7.1.1 Peptides
Peptides were synthesized using a multi-pin format by Mimotopes (Adelaide, Australia). The sequences of the bevacizumab light and heavy chain V regions were synthesized as 15-mer peptides overlapping by 12 amino acids ( FIGS. 3 and 4 ) for a total of 69 peptides. Peptides arrived lyophilized and were re-suspended in DMSO (Sigma-Aldrich) at approximately 1-2 mg/mL. Stock peptides were kept frozen at −20° C.
7.1.2 Human Peripheral Blood Mononuclear Cells
Community donor buffy coat products were purchased from the Stanford Blood Center, Palo Alto, Calif. Buffy coat material was diluted 1:1 v:v with DPBS containing no calcium or magnesium. Diluted buffy coat material (25-35 mls) was underlayed in 50 ml conical centrifuge tubes (Sarsted or Costar) with 12.5 mls of FicollPaque-PLUS (GE Healthcare). The samples were centrifuged at 900 g for 30 minutes at room temperature. Peripheral blood mononuclear cells (PBMC) were collected from the interface. DPBS was added to bring the final volume to 50 mls and the cells were centrifuged at 350 g for 5 minutes. Pelleted cells were resuspended in DPBS and counted.
7.1.3 Dendritic Cells
For isolation of dendritic cells, T75 culture flasks (Costar) were seeded with 10 8 freshly isolated PBMC in a total volume of 30 mls AIM V media (Invitrogen). Excess PBMC were frozen at −80° C. in 90% fetal calf serum (FCS), 10% DMSO at 5×10 7 cells/mL. T75 flasks were incubated at 37° C. in 5% CO 2 for 2 hours. Nonadherent cells were removed, and the adherent monolayer was washed with DPBS. To differentiate dendritic cells from monocytes, 30 mls of AIM V media containing 800 units/mL of GM-CSF (R and D Systems) and 500 units/mL IL-4 (R and D Systems) was added. Flasks were incubated for 5 days. On day 5 IL-1α (Endogen) and TNFα (Endogen) were added to 50 μg/mL and 0.2 ng/mL. Flasks were incubated two more days. On day 7, dendritic cells were collected by the addition of 3 mls of 100 mM EDTA containing 0.5 to 1.0 mg Mitomycin C (Sigma-Aldrich) for a final concentration of 10 mM EDTA and 16.5 to 33 μg/mL Mitomycin C. Flasks were incubated an additional hour at 37° C. and 5% CO 2 . Dendritic cells were collected, and washed in AIM V media 2-3 times.
7.1.4 Cell Culture
On day 7, previously frozen autologous PBMC were thawed quickly in a 37° C. water bath. Cells were immediately diluted into DPBS or AIM V media and centrifuged at 350 g for 5 minutes. CD4 + cells were enriched by negative selection using magnetic beads (Easy-Sep CD4 + kit, Stem Cell Technologies). Autologous CD4 + T cells and dendritic cells were cocultured at 2×10 5 CD4 + T cells per 2×10 4 dendritic cells per well in 96 well round bottomed plates (Costar 9077). Peptides were added at approximately 5 μg/mL. Control wells contained the DMSO (Sigma) vehicle alone at 0.25% v:v. Positive control wells contained DMSO at 0.25% and tetanus toxoid (List Biologicals or CalBioChem) at 1 μg/mL. Cultures were incubated for 5 days. On day 5, 0.25 μCi per well of tritiated thymidine (Amersham or GE Healthcare) was added. Cultures were harvested on day 6 to filtermats using a Packard Filtermate Cell harvester. Scintillation counting was performed using a Wallac MicroBeta 1450 scintillation counter (Perkin Elmer).
7.1.5 Data Analysis
Average background CPM values were calculated by averaging individual results from 6 to 12 replicates. The CPM values of the four positive control wells were averaged. Replicate or triplicate wells for each peptide were averaged. Stimulation index values for the positive control and the peptide wells were calculated by dividing the average experimental CPM values by the average control values. In order to be included in the dataset, a stimulation index of greater than 3.0 in the tetanus toxoid positive control wells was required. A response was noted for any peptide resulting in a stimulation index of 2.95 or greater. Peptides were tested using peripheral blood samples from a group of 99 donors. Responses to all peptides were compiled. For each peptide tested, the percentage of the donor set that responded with a stimulation index of 2.95 or greater was calculated. In addition, the average stimulation index for all donors was also calculated.
7.2 Results
7.2.1 Identification of CD4+ T Cell Epitopes in the Bevacizumab VH And VL Regions
CD4 + T cell epitope peptides were identified by an analysis of the percent responses to the peptides within the set of 99 donors. The average percent response and standard deviation were calculated for all peptides tested describing the bevacizumab heavy chain and light chain V regions. A response rate greater than or equal to the average background response plus three standard deviations was considered a potential CD4 + T cell epitope. For the bevacizumab light chain V region, 32 peptides were tested ( FIG. 3 ) which resulted in an average background percent response of 2.1±2.7%. Three standard deviations above background was determined to be 10.2%. One peptide at position 13 (Q40-T54) displayed this level of response in the bevacizumab light chain peptide dataset, with a response rate of 15.2% ( FIG. 28A ). For the bevacizumab heavy chain V region, 37 peptides were tested ( FIG. 4 ). The average background percent response was 2.8±3.1%. Three standard deviations above background was 12.1%. One peptide within the bevacizumab heavy chain dataset, #18 (N52-R56), achieved a percent response of 16.2% ( FIG. 29A ). A second peptide at position #30 in the heavy chain dataset achieved a response rate of 9.1%, and was considered an epitope due to an increased stimulation index (see below).
The average stimulation index was calculated for all peptides in the dataset. Light chain peptide 13 had a high average stimulation index of 1.82±0.24 s.e.m. ( FIG. 28B ). Heavy chain peptide #18 had an average stimulation index value of 2.16±0.35 s.e.m. ( FIG. 29B ). The peptide at position #30 returned an average stimulation index of 1.45±0.18 s.e.m. ( FIG. 29B ) due to an elevated average stimulation index and an above average response rate. The peptide at position #30 was included when determining CD4 + T cell epitope content of this antibody V region. All of these stimulation index values are significantly higher than the average stimulation index for all peptides in the two datasets (1.14±0.07 for all 69 heavy chain and light chain peptides).
These data indicate that there are three CD4+ T cell epitope regions in the bevacizumab V regions ( FIG. 5 ). In the VL region, an epitope is found at peptide position 13 that encompasses framework 2 and two amino acids from CDR2. The sequence contains a murine back-mutation (V46) inserted into the sequence during humanization. In FIG. 5 , the CDR-derived amino acids are underlined. In the heavy chain, two epitope peptide regions were identified. The stronger epitope at position #18 encompasses all of CDR2. The second epitope peptide region contains both framework 3 and CDR3 amino acids.
7.2.2 Reduced Immunogenicity Variants of Bevacizumab Variant Antibodies
Bevacizumab was subjected to mutational analysis (see Example 2 below). Based on antigen-binding studies performed in conjunction with the mutational analysis, a set of candidate amino acid substitutions within the CDR-H2 and CDR-H3 region were identified that did not significantly reduce the affinity of the antibody to VEGF ( FIG. 6 ). These amino acid substitutions were tested singly and in combination to identify variants of bevacizumab with reduced immunogenicity as compared to the wild type antibody.
8. Example 2: Identification of Variants of Bevacizumab with Increased Affinity to VEGF
The bevacizumab antibody was subjected to comprehensive mutational analysis to identify mutants that had increased affinity to VEGF as compared to bevacizumab. The increased affinity of candidate high affinity mutants to VEGF as compared to bevacizumab was analyzed by BIAcore to confirm their binding characteristics.
8.1 Materials & Methods
8.1.1 BIAcore
Fifteen variant bevacizumab VH region constructs were cloned along with the unmodified VL region into a human IgG 1 -containing plasmid, expressed in 293T/17 cell lines by transient transfection, and antibodies purified by Protein A or Protein G affinity. The affinity of the antibodies for VEGF (R&D systems, Minneapolis, Minn.) was determined by using a BIAcore 2000 and 3000 surface plasmon resonance system (BIAcore, GE Healthcare, Piscataway, N.J.). Polyclonal goat anti-human Fc antibody (Jackson Immunoresearch) was first immobilized to the biosensor surface using standard BIAcore amine coupling reagents (N-ethyl-N′-dimethylamino-propylcarbodiimide, EDC; N-hydroxysuccinimide, NHS; and ethanolamine HCl, pH 8.5), followed by the capture of anti-VEGF antibodies (bevacizumab and bevacizumab variants) on parallel surfaces at a low flow rate of 5 μL/min. RL was kept low to minimize avidity due to the dimeric nature of VEGF. No capture of the antibody was made on the reference surface to serve as a negative control. Subsequently, VEGF was injected to all flow cells at a flow rate of 50 μL/min for two minutes to monitor association followed by a 25-minute flow of HBS-P running buffer (10 mM HEPES, 150 mM sodium chloride, 0.005% P-20, pH 7.4) to monitor the dissociation phase. At each cycle, VEGF, in 6 different concentrations of VEGF ranging between 0 nM and 512 nM and at four-fold increments, was injected over the surface. The surface was regenerated with 1.5% H 3 PO 4 at a flow rate of 100 μL/min in two brief pulses at the end of each cycle. Binding data were fit to the 1:1 Langmuir model to extract binding constants from the BIAevaluate software. Double referencing was applied in each analysis to eliminate background responses from the reference surface and buffer only control. All the binding kinetics data were analyzed at least three separate determinations.
8.2 Results
Results are displayed as absolute numbers and as fold improvement over wild-type. Almost all the variants listed have improved association (k on ) and dissociation (k off ) rates when compared to bevacizumab or wild-type ( FIG. 7 ). The final affinity values for the variants were in the 0.1 nM range and reach as low as 0.08 nM for the variant corresponding to SEQ ID NO:82. These values contrast to bevacizumab which has a measured affinity in these experiments of 1.9 nM.
FIGS. 8 and 9 show additional heavy chain variants that preliminary binding studies show have a greater affinity to VEGF than bevacizumab (data not shown). FIG. 10 shows heavy chain variants that preliminary studies indicate have an affinity to VEGF similar to that of bevacizumab (data not shown). FIG. 11 shows light chain variants that that preliminary studies indicate have an affinity to VEGF similar to that of bevacizumab (data not shown).
9. Example 3: Selection of Deimmunized Variant Peptides
Variant peptides corresponding to the immunogenic regions of bevacizumab (see Example 1) were generated ( FIGS. 14-16 ). The variant peptides were selected on the basis of comprehensive mutational analysis described in Example 2, in which CDR modifications were identified that did not substantially reduce the binding affinity of bevacizumab to VEGF.
A total of 77 peptides were synthesized and tested based on the antigen-binding studies, including two syntheses of each of the parent 15-mer peptides. A total of 93 donors were tested with the parent and variant peptides utilizing the method described in Section 7.1 and the results are shown in FIGS. 30A to 30C . In particular, FIGS. 30A to 30C show CD4+ T cell responses to mutant bevacizumab epitope peptides. Average responses to the unmodified parent epitope sequences are indicated with open marks. Large circles indicate selected peptides referred to in FIG. 17 (see below). FIG. 30A shows VH CDR2 peptides; FIG. 30B shows VH CDR3 peptides; and FIG. 30C shows VL CDR2 peptides. Immunogenicity data for selected peptides are shown in FIG. 17 .
For the heavy chain variable region CDR2 peptides, the average percent response to the parent peptides in this study was 5.38% and 6.45%. Three mutant peptides demonstrated a reduced overall response rate and average stimulation index as compared to the parent peptides.
The parent peptide response rates for the heavy chain variable region CDR3 epitope peptides in this study were 7.53% and 6.45%. A single mutant peptide sequence was found that demonstrated reduced overall responses as compared to the parent peptide.
Finally, the light chain variable region CDR2 peptide parent response rates in this study were 25.8% and 15%. One mutant peptide was identified that demonstrated a reduced overall immunogenicity as compared to the parent peptide.
To demonstrate that the deimmunizing mutations maintained affinity to VEGF as compared to bevacizumab, flow cytometry was used to compare the binding properties of variant antibodies incorporating mutations in the modified epitope peptides (either as single or double amino-acid modifications and bevacizumab). Several deimmunizing mutations had comparable or increased affinity to VEGF as compared to bevacizumab.
In one study, transiently transfected 293c18 cells expressing surface-bound forms of the bevacizumab variants were stained with Alexa647-conjugated rHuVEGF (Invitrogen Cat #PHG0143) at 3 nM and goat-anti-human-kappa-RPE (Southern Biotech Cat#2063-09) at a 1:400 dilution. Data were gathered by way of flow cytometry using a DakoCytomation CyAn ADP flow cytometer and was analyzed using Treestar's FloJo analysis program. The mean fluorescence intensities (MFI) measured in this work are set forth in FIG. 18 .
In another study, the EC 50 of bevacizumab and variant antibody binding to VEGF was measured. Antibody titration plots were generated using bevacizumab and its variants with Alexas647-conjugated rHu VEGF as described above, with the VEGF serially diluted two-fold from 5 μM to 0.01 μM. The EC 50 values are shown in FIG. 19 .
10. Example 4: Identification of Further Variants of Bevacizumab with Increased Affinity to VEGF
Further comprehensive mutational analysis focused on the bevacizumab V H was carried out and the resulting beneficial substitutions introduced into DLL4-VEGF dual-variable-domain (“DVD”) immunoglobulins (Igs). A DVD-Ig immunoglobulin combines the target-binding variable domains of two monoclonal antibodies via linkers to create a tetravalent, dual-targeting single agent (see Gu & Ghayur, 2012, Methods in Enzymology 502:25-41). The DLL4-VEGF DVD-Igs included the variable regions of the humanized anti-DLL4 antibody h1A11.1 (which has a heavy chain variable region of SEQ ID NO:187 of U.S. App. 2011/0217237 and a light chain variable of SEQ ID NO:197 U.S. App. 2011/0217237). DLL4 is a delta-like ligand that is strongly expressed in tumor vessels and whose signaling via the Notch pathway is required for normal vascular development and tumor angiogenesis. Blockade of D114/Notch signaling was found to retard tumor growth by enhancing the chaotic, nonproductive vascular sprouting characteristic of tumor angiogenesis. See Lobov et al., 2007, Proc. Nat'l. Acad. Sci. U.S.A. 104: 3219-3224.
Two versions of the DLL4-VEGF DVD-Ig were generated, containing different linkers. The first “SL” version contained a short heavy chain linker (with the amino acid sequence ASTKGP (SEQ ID NO:427)) separating the anti-DLL4 and bevaciziumab heavy chain variable regions and a long light chain linker (with the amino acid sequence TVAAPSVFFPP (SEQ ID NO:433)) separating the anti-DLL4 and bevaciziumab light chain variable regions. The second “SS” version contained a short heavy chain linker (with the amino acid sequence ASTKGP (SEQ ID NO:427)) separating the anti-DLL4 and bevaciziumab heavy chain variable regions and a short light chain linker (with the amino acid sequence TVAAP (SEQ ID NO:418)) separating the anti-DLL4 and bevaciziumab light chain variable regions. In both cases, the bevaciziumab variable regions were internal to the anti-DLL4 variable regions (see FIG. 31 ).
The DLL4-VEGF DVD-Igs were subjected to further mutational analysis to identify mutants that show increased affinity to VEGF. Comprehensive mutational analysis focused on the bevacizumab V H was conducted at 2 different conditions: a “1-hour assay” involving 1 hour of binding of antibody to target follow by washing, and an “overnight assay” involving 1 hour of binding of antibody to labeled VEGF and overnight competition with excess unlabeled VEGF followed by washing. The 1-hour assay is more likely to enrich for variants with faster association rates and the overnight assay is intended to enrich for those antibodies with slower dissociation rates since the binding has to survive over night in the presence of cold competitor. The variants were screened in three different formats: IgG, DVD-Ig with SL linkers, and DVD-Ig with SS linkers. Binding of bevacizumab and its variants containing the 4 amino acid substitutions employed in the ranibizumab VH (T28D, N31H, H97Y and S100aT; see Chen, 1999, J. Mol. Biol. 293: 865-881) were not distinguishable in the 1-hour assay but were distinguishable in the overnight assay (data not shown). Similarly, the overnight assay measures differences among variants with slower dissociation rates better than the standard 1-hour assay. This is exemplified for the H97Y substitution: the binding was measured as 2.6× over WT in the 1-hour assay but 9.3× in the overnight assay. For an antibody with a slow dissociation rate such as bevacizumab, the 1-hour assay is too short for binding to reach equilibrium thus the results will be biased toward faster association rates. The overnight incubation allows the binding of most variants to reach equilibrium, thus it should be close to actual binding affinity. Bevacizumab variants in IgG format were also analysed by BIAcore in addition to the 1-hour and overnight assays. Corresponding variants in DVD-Ig format were analyzed for binding kinetics by BIAcore only.
10.1 Materials & Methods
10.1.1 ELISA
To detect identified variants binding to antigen, ELISA plates (Nunc-Immuno MaxiSorp plates, Nalge Nunc, Rochester, N.Y.) were coated overnight at 4° C. with unlabeled human VEGF at 1 μg/mL in 0.2 M sodium carbonate-bicarbonate buffer (pH 9.4, Pierce, Rockford, Ill.). The plates were then blocked with SuperBlock Blocking Buffer (Pierce, Rockford, Ill.) for 30 min and washed with Washing Buffer (PBS containing 0.1% Tween 20). All the washing steps were performed for three times. Bevacizumab variants diluted in 100 μL ELISA buffer (PBS containing 1% BSA and 0.1% Tween 20) at 2 μM were added to wells and incubated for 1 hr or overnight at 37° C. shaker. Each plate contained parental bevacizumab as a control to be used to normalize the binding improvement of each variant. The plates were washed and 100 μL of goat anti-human kappa HRP-conjugated antibody (Southern Biotech, Birmingham, Ala.) diluted at 1:1000 in ELISA buffer was added to each well. After 30 minutes of incubation, plates were washed and bound antibodies were detected by addition of TMB 1 Component HRP Microwell substrate (BioFx #TMBW-1000-01). The reaction was terminated by addition of 100 μL/well of 650 nM Stop Reagent for TMB Microwell substrate and the absorbance was measured at 650 nm using a VERSAmax microplate reader (Molecular Devices, Sunnyvale, Calif.). Data were fitted using nonlinear regression with the software GRAPHPAD PRISM (GraphPad, San Diego) and the fold improvement over WT was reported as EC 50 wild type/EC 50 mutant.
10.1.2 BIAcore
The binding kinetics and affinity of the antibodies for VEGF (human VEGF-A residues 27-191 of Accession # AAV38412) was determined by using a BIAcore T200 surface plasmon resonance system (BIAcore, GE Healthcare, Piscataway, N.J.). Coupling running buffer was HBS-EP+ running buffer (10 mM HEPES, 150 mM sodium chloride, 3 mM EDTA 0.05% P-20, pH 7.4); assay running buffer was HBS-EP+ with 300 mM sodium chloride and 0.1 mg/mL BSA (Sigma A7906). Polyclonal goat anti-human Fc (Thermo Scientific prod #31125) was first immobilized to the biosensor surface in 10 mM sodium acetate, pH 4.5 using standard BIAcore amine coupling reagents (N-ethyl-N′-dimethylamino-propylcarbodiimide, EDC; N-hydroxysuccinimide, NHS; and ethanolamine HCl, pH 8.5). For binding kinetics assay a series of cycles were performed, each cycle consisted of 1) mAb capture, 2) Ag or buffer injection, 3) dissociation phase and 4) regeneration. Briefly, anti-VEGF antibodies were captured on parallel surfaces at a low flow rate of 10 μL/min. Capture levels were kept low to minimize avidity due to the dimeric nature of VEGF. No capture of the antibody was made on the reference surface to serve for primary referencing and as a negative control. Subsequently, VEGF or buffer only was injected to all flow cells at a flow rate of 80 μL/min for three minutes to monitor association followed by a 20- to 60-minute flow of assay running buffer at a flow rate of 80 μL/min to monitor dissociation. VEGF injections were a 3-point, 9-fold concentration series from 900 nM to 11.11 nM, buffer only injections served for secondary referencing. At the end of each cycle the surface was regenerated with 10 mM glycine, pH 1.5 at a flow rate of 60 μL/min in pulses of 60 and 10 sec. Binding data were fit to the 1:1 Langmuir model with mass transport term included using Biacore T200 Evaluation Software to determine the binding constants.
10.2 Results
Results for improved affinity variants are displayed in FIG 21 . Variants whose binding was similar to or lower than that of bevacizumab are identified in FIG. 22 . Affinity improvement was calculated as K D wild type/K D mutant and EC 50 wild type/EC 50 mutant for BIAcore and ELISA studies, respectively. In addition to those already described in Example 2, a total of 22 variants with improved affinity by either ELISA or BIAcore in IgG format were identified. Interestingly, not all the properties of IgG variants are transferable to inner variable domain of DVD-Ig. For SL linked DVD-Ig, 6 variants (T30N, N31F, N31H, N31W and N31Y in CDR-H1 and S100aT in CDR-H3) showed at least 1.5-fold improvement in K D in overall affinity and for SS linked DVD-Ig, only 3 (N31F, N31H, and N31Y in CDR-H1) had at least 1.5-fold improvement in K D . Substitutions resulting in dissociation rate improvements had similar effects in both the IgG format and the DVD-Ig format with the SL linker. Substitutions resulting in reduced dissociation rates in the IgG format also resulted in reductions in dissociation rates of corresponding DVD-Ig variants with the SS linker, albeit at a reduced magnitude as compared to the IgG. Although 11 variants with faster association rates in IgG were identified, only the H97P substitution resulted in a faster association rate among DVD-Ig variants with the SS linker, suggesting that the presence of outer domain can cancel the effect of improved association. For the SS linked DVD-Ig, the steric hindrance of the inner domain could be even greater than in the SL linked DVD-Ig due to the short distance of peptide that links the two domains.
11. Example 5: Characterization of Combinatorial Variants of Bevacizumab
11.1 Background
Further CDR variants of bevacizumab were generated that incorporated multiple substitutions identified in Example 4. The ability of the variants to block binding to of VEG to VEGF receptors, and their ability to inhibit VEGF-induced proliferation of HUVEC cells, were assayed as described below.
11.2 VEGF-R 1 and VEGF-R 2 Competition ELISA
ELISA plates were coated either with recombinant VEGF-R 1 or VEGF-R 2 (R&D systems, Minneapolis, Minn.) at 250 ng/mL, in sodium carbonate-bicoarbonate buffer (pH 9.4, Thermo Scientific, Rockford, Ill.) overnight at 4° C. Plates were washed and blocked with Superblock (Thermo Scientific) for 30 min. VEGF (4 ng/mL for VEGF-R 1 plates and 400 ng/mL for VEGF-R 2 plates respectively) and antibodies (in IgG format) in ELISA buffer (EB) (starting from 670 nM at 1:2.5 dilutions for VEGF-R 1 and 67 nM at 1:2 dilutions for VEGF-R 2 ) were pre-incubated for 1 hour at room temperature, and then added to the washed plate. The plates were incubated for 1 hour at room temperature, then biotinylated goat-anti-VEGF (R&D systems, 0.5 mg/mL) diluted at 1:2,000 in EB was added after washing. After a 1-hour incubation at room temperature, plates were washed and Streptavidin-HRP (Jackson ImmunoResearch, West Grove, Pa. 1 mg/ml) diluted at 1:2,000 in EB was added. After 30 minutes' incubation at room temperature, the plates were washed and the binding was detected with 3,3′,5,5′-tetramethylbenzidine (TMB) (BioFX, Owings Mills, Md.). The reaction was terminated with stop solution (BioFX) and the absorbance was measured at 650 nM using VERSA max microplate reader (Molecular Devices, Sunnyvale, Calif.). Data were fitted using nonlinear regression with the software GRAPHPAD PRISM (GraphPad, San Diego, Calif.) and reported as EC 50 wild type/EC 50 mutant as “fold improvement over wild type”.
11.3 Inhibition of VEGF-Induced HUVEC Proliferation
Human umbilical vein endotherial cells (HUVEC) was used for the measurement of VEGF mitogenic activity as described elsewhere (Fuh et al., 1998, JBC 273:11197; Fairbrother et al., 1998, Biochemistry 37: 17754). In this assay, the potencies of parental anti-VEGF IgG with those containing combinatorial mutations for their ability to inhibit the VEGF-stimulated growth of HUVEC were compared
HUVEC cells were plated in a 96-well plate at 6,000 cells per well (Life Technologies, Grant Island, N.Y.) in M200RPF (Life Technologies) media with 0.2% FBS and incubated overnight at 37° C. Serial dilutions of antibodies starting at 125 μg/mL were prepared in 100/μL of M200RPF containing 0.2% FBS and pre-incubated with 100 μL of 50 ng/mL VEGF for 30 minutes on ice. After incubation the VEGF/antibody mixtures were added to individual wells after removal of media and the plates incubated for 48 hours at 37° C. 204 of Alamar blue was added to each well and incubated overnight and the resulting signal read spectrofluoromtrically (excitation at 544 nM, emission at 590 nM) using a SPECTRAmax GEMINI SX microplate reader (Molecular Devices).
11.4 Results
Results for combinatorial variants designated C1 through C13 are displayed in FIG. 24 . Improvements in inhibition of VEGFR1 and VEGFR2 binding in HUVEC proliferation were calculated as EC 50 wild type/EC 50 variant. As shown in FIG. 24 , the improvement in ability to block inhibition of proliferation correlates with the improved affinity to VEGF.
Because the H97F mutation alone improved the off-rate by >6-fold while worsening the on-rate by 2.3-fold ( FIG. 21 ), the incorporation of H97F into combinatorial variants in an IgG format tends to improve the off-rate but may not always results in significant improvement in affinity (compare C5 vs. C12; C6 vs. C9 in FIG. 26 ). Furthermore, the H97F substitution tends to lower the yield after protein A purification (see “Expression yield” column of FIG. 26 ). The incorporation of the T30W substitution further worsens the yield. These effects on yield may be due to alterations in folding during production caused by the increased amount of hydrophobic residues exposed to solution. The decreased yield was not observed in a DVD-Ig format (data not shown).
12. Example 6: Characterization of Binding of Bevacizumab Variants in DVD Format
The DVD-Ig linker design as well as its length is known to cause significant impact in the activity of inner domain. The loss of affinity of inner variable domains to their targets is known to be largely driven by steric hindrance effects (DiGiammarino et al., 2011, mAbs 3:487-494).
The binding of the anti-VEGF variable domain to VEGF was compared in different formats: IgG, and DVD-Ig with SS linkers, or DVD-Ig with SL linkers. In the DVD-Ig format, the anti-VEGF variable domain was placed as the inner domain. The binding was assayed via BIAcore using the conditions described in Example 4.
As expected, placing the anti-VEGF variable domain as the inner variable domain of DVD-Ig with an SS linker resulted in loss of affinity, in this case 32-fold (the IgG/SS KD ratio was 0.03) (see FIG. 25 ). Using an SL linker still resulted in a lost of affinity, but not as significant as the loss of affinity with the SS linker—in this case the affinity reduction was 2.7-fold (the IgG/SL KD ratio was 0.37). The loss of affinity was mainly due to slower on-rate, as previously observed for anti-TNFα DVD-Ig (DiGiammarino et aL, 2011, mAbs 3:487-494).
To improve the affinity of VEGF in the inner variable domain, the ranibizumab (Lucentis®) VH substitutions were incorporated into the anti-VEGF heavy chain variable region (T28D and N31H in CDR-H1, and H97Y and S100aT in CDR-H3). The ranibizumab VH substitutions improved the affinity by 5.4-fold in the IgG formate under the BIAcore conditions employed ( FIG. 25 ). When introduced into the inner VH domain of the DVD-Ig, the ranibizumab substitutions improved VEGF binding by 2.5-fold for a DVD-Ig with and SS-linker; however, the substitutions did not improve binding of the DVD-Ig with SL linker at all (the KD ratio of the variant relative to the wild type sequences was 0.8). Because the SS linker alone caused a significant impact on affinity, the KD was only 7.86 nM, which is 13-fold lower the than parental anti-VEGF antibody, even with the contribution of the ranibizumab VH substitutions.
Next, select combinatorial variants from FIG. 24 were incorporated into DVD-Ig formats, in the context of the SL version of the DLL4-VEGF DVD-Ig as described in Example 4. The binding of the variants to VEGF was assayed by BIAcore, as also described in Example 4.
Results are shown in FIG. 26 . As in prior DVD-Ig studies, not all increased affinity substitutions in the context of an IgG molecule led to increased affinity in the context of a DVD-Ig inner anti-VEGF domain. Consistent with the data in FIG. 24 , the amino acid substitutions in ranibizumab that increase affinity several fold in the context of an IgG do not improve the affinity of inner VEGF domain at all. At least two of the combinatorial variants, having combinations C10 and C12, increased affinity by approximately 2-fold in the context of that assay. The affinity improvements are likely even greater, as the off rates for these variants were at the detection limits for the assay (marked with an asterisk (*) in FIG. 26 ). Variants incorporating combinations C5, C6, C5, C9 and C11 also showed off rates at the detection limits for the assay, and are likely to have better affinities than shown in FIG. 26 .
13. SPECIFIC EMBODIMENTS, CITATION OF REFERENCES
Various aspects of the present disclosure are described in the embodiments set forth in the following numbered paragraphs.
Embodiment 1 . An anti-VEGF antibody or an anti-VEGF binding fragment of an antibody which comprises a VEGF heavy chain variable region comprising CDRs having amino acid sequences corresponding to SEQ ID NO:3 (CDR-H1), SEQ ID NO:4 (CDR-H2), and SEQ ID NO:5 (CDR-H3), and a VEGF light chain variable region comprising CDRs having amino acid sequences corresponding SEQ ID NO:6 (CDR-L1), SEQ ID NO:7 (CDR-L2) and SEQ ID NO:8, wherein CDR-H1 and/or CDR-H3 comprises one or more of the substitutions in FIG. 21 , and optionally one or more mutations or combinations of mutations selected from one or more of FIGS. 6, 7, 8, 9, 19, 12A to 12I, 13-16, 21 , or 22 , wherein the six CDRs altogether have up to 17 amino acid substitutions as compared to CDR sequences of the antibody bevacizumab or the antibody ranibizumab.
Embodiment 2. The anti-VEGF antibody or anti VEGF binding fragment of embodiment 1 which comprises one or more substitutions selected from T30K; T30N, N31H; N31L; N31W; N31Y; H97F; H97Y; S100aQ; and S100aT.
Embodiment 3. The anti-VEGF antibody or anti VEGF binding fragment of embodiment 1 which comprises one or more substitutions selected from T28G; T28R; T28Y; T30R; and S100aA.
Embodiment 4. The anti-VEGF antibody or anti VEGF binding fragment of embodiment 1 which comprises one or more substitutions selected from N31F; N31H; and N31Y.
Embodiment 5. The anti-VEGF antibody or anti VEGF binding fragment of embodiment 1 which comprises one or more substitutions selected T30N; N31F; N31H, N31W and N31Y; and S100aT.
Embodiment 6. The anti-VEGF antibody or an anti-VEGF binding fragment of embodiment 1 which comprises the substitution T30K.
Embodiment 7. The anti-VEGF antibody or an anti-VEGF binding fragment of embodiment 1 which comprises the substitution T30N.
Embodiment 8. The anti-VEGF antibody or an anti-VEGF binding fragment of embodiment 1 which comprises the substitution N31H.
Embodiment 9. The anti-VEGF antibody or an anti-VEGF binding fragment of embodiment 1 which comprises the substitution N31L.
Embodiment 10. The anti-VEGF antibody or an anti-VEGF binding fragment of embodiment 1 which comprises the substitution N31 W.
Embodiment 11. The anti-VEGF antibody or an anti-VEGF binding fragment of embodiment 1 which comprises the substitution N31Y.
Embodiment 12. The anti-VEGF antibody or an anti-VEGF binding fragment of embodiment 1 which comprises the substitution H97F.
Embodiment 13. The anti-VEGF antibody or an anti-VEGF binding fragment of embodiment 1 which comprises the substitution H97Y.
Embodiment 14. The anti-VEGF antibody or an anti-VEGF binding fragment of embodiment 1 which comprises the substitution S100aQ.
Embodiment 15. The anti-VEGF antibody or an anti-VEGF binding fragment of embodiment 1 which comprises the substitution S100aT.
Embodiment 16. The antibody of any of embodiments 1 to 15, which is a DVD-Ig in which said VEGF heavy and light chain variable regions together form a VEGF binding portion and which further comprises a second binding portion, said second binding portion comprising second heavy chain and light chain variable regions which together bind to a second target.
Embodiment 17. A DVD-Ig comprising: (a) a VEGF binding portion comprising a VEGF heavy chain variable region comprising CDRs having amino acid sequences corresponding to SEQ ID NO:3 (CDR-H1), SEQ ID NO:4 (CDR-H2), and SEQ ID NO:5 (CDR-H3) and a VEGF light chain variable region comprising CDRs having amino acid sequences corresponding SEQ ID NO:6 (CDR-L1), SEQ ID NO:7 (CDR-L2) and SEQ ID NO:8, wherein CDRs of the VEGF binding portion include one or more substitutions as compared to bevacizumab or ranibizumab selected from N31F in CDR-H1; K64S in CDR-H2; K64Q in CDR-H2; Y53F in CDR-H2; H97E in CDR-H3; H97D in CDR-H3; H97P in CDR-H3; Y98F in CDR-H3; Y99E in CDR-H3; Y99D in CDR-H3; S100aG in CDR-H3; and T51A in CDR-L2, wherein the anti-VEGF binding portion optionally has one or more additional mutations or combinations of mutations selected from one or more of FIGS. 6, 7, 8, 9, 10, 11, 12A to 12I, 13-16 , or 21 - 26 , wherein the six CDRs of the VEGF binding portion altogether have up to 17 amino acid substitutions as compared to CDR sequences of the antibody bevacizumab or the antibody ranibizumab; and (b) a second binding portion comprising second heavy and light chain variable regions which together bind to a second target.
Embodiment 18. The antibody of embodiment 16 or embodiment 17, wherein the second binding portion is on the outside of the VEGF binding portion.
Embodiment 19. The antibody of embodiment 16 or embodiment 17, wherein the VEGF binding portion is on the outside of the second binding portion.
Embodiment 20. The antibody of any one of embodiments 16 to 19, wherein the VEGF and second heavy chain variable regions are connected via a short linker, optionally ASTKGP (SEQ ID NO:427) or GGGGSG (SEQ ID NO:430).
Embodiment 21. The antibody of any one of embodiments 16 to 19, wherein the VEGF and second heavy chain variable regions are connected via a medium linker, optionally GGGGSGGGGS (SEQ ID NO:431).
Embodiment 22. The antibody of any one of embodiments 16 to 19, wherein the VEGF and second heavy chain variable regions are connected via a long linker, optionally ASTKGPSVFPLAP (SEQ ID NO:429) or GGGGSGGGGSGGGG (SEQ ID NO:432).
Embodiment 23. The antibody of any one of embodiments 16 to 22, wherein the VEGF and second light chain variable regions are connected via a short linker, optionally TVAAP (SEQ ID NO:418), QPKAAP (SEQ ID NO:421), or GGSGG (SEQ ID NO:423).
Embodiment 24. The antibody of any one of embodiments 16 to 22, wherein the VEGF and second light chain variable regions are connected via a medium linker, optionally GGSGGGGSG (SEQ ID NO:424).
Embodiment 25. The antibody of any one of embodiments 16 to 22, wherein the VEGF and second light chain variable regions are connected via a long linker, optionally TVAAPSVFIFPP (SEQ ID NO:420), QPKAAPSVTLFPP (SEQ ID NO:422), or GGSGGGGSGGGGS (SEQ ID NO:425).
Embodiment 26. The antibody of any one of embodiments 16 to 25, wherein the second target is DLL4.
Embodiment 27. The antibody of embodiment 26, wherein the CDRs second heavy and light chain variable regions have the CDR sequences of the CDRs of DLL4 binding portions SEQ ID NO:413 and SEQ ID NO:414.
Embodiment 28. The antibody of embodiment 27, wherein the second heavy and light chain variable regions have the sequences of the DLL4 binding portions of SEQ ID NO:413 and SEQ ID NO:414.
Embodiment 29. The antibody or binding fragment of any one of embodiments 1-28, wherein CDR-H2 includes the substitution K64S.
Embodiment 30. The antibody or binding fragment of any one of embodiments 1-28, wherein CDR-H2 includes the substitution K64Q.
Embodiment 31. The antibody or binding fragment of any one of embodiments 1-28, wherein CDR-H2 includes the substitutions Y53F and K64Q.
Embodiment 32. The antibody or binding fragment of any one of embodiments 1-12 and 14-31, wherein CDR-H3 includes the substitutions H97E and Y98F.
Embodiment 33. The antibody or binding fragment of any one of embodiments 1-32, wherein CDR-L2 includes the substitution T51A, and wherein CDR-L2 in said VEGF antibody does not consist of a CDR-L2 sequence set forth in FIG. 13 .
Embodiment 34. The antibody or binding fragment of any one of embodiments 1-7 and 12-33, wherein said CDR-H1 includes the substitution N31F, and wherein CDR-H1 in said VEGF antibody does not consist of a CDR-H1 sequence set forth in FIGS. 12A to 12I .
Embodiment 35. The antibody or binding fragment of any one of embodiments 1-11 and 14-34, wherein said CDR-H3 includes the substitution H97E, and wherein CDR-H3 in said VEGF antibody does not consist of a CDR-H3 sequence set forth in FIGS. 12A to 12I .
Embodiment 36. The antibody or binding fragment of any one of embodiments 1-11, 14-31, and 33-34, wherein said CDR-H3 includes the substitution H97D, and wherein CDR-H3 in said VEGF antibody does not consist of a CDR-H3 sequence set forth in FIGS. 12A to 12I .
Embodiment 37. The antibody or binding fragment of any one of embodiments 1-11, 14-31, and 33-34, wherein said CDR-H3 includes the substitution H97P, and wherein CDR-H3 in said VEGF antibody does not consist of a CDR-H3 sequence set forth in FIGS. 12A to 12I .
Embodiment 38. The antibody or binding fragment of any one of embodiments 1-37, wherein said CDR-H3 includes the substitution Y99E, and wherein CDR-H3 in said VEGF antibody does not consist of a CDR-H3 sequence set forth in FIGS. 12A to 12I .
Embodiment 39. The antibody or binding fragment of any one of embodiments 1-37, wherein said CDR-H3 includes the substitution Y99D, and wherein CDR-H3 in said VEGF antibody does not consist of a CDR-H3 sequence set forth in FIGS. 12A to 12I .
Embodiment 40. The antibody or binding fragment of any one of embodiments 1-13 and 18-39, wherein said CDR-H3 includes the substitution S100aG, and wherein CDR-H3 in said VEGF antibody does not consist of a CDR-H3 sequence set forth in FIGS. 12A to 12I .
Embodiment 41. The antibody or binding fragment of any one of embodiments 1-13, and 18-40, wherein said CDR-H3 includes the substitution S100aG, and wherein position 3 in CDR-H3 of said VEGF antibody is not tyrosine.
Embodiment 42. The antibody or binding fragment of any one of embodiments 1-41, wherein CDR-H1 includes at least one substitution selected from T28P, N31F, N31G and N31M, and wherein CDR-H1 in said VEGF antibody does not consist of a CDR-H1 sequence set forth in FIGS. 12A to 12I .
Embodiment 43. The antibody or binding fragment of any one of embodiments 1-42, wherein CDR-H3 includes at least one substitution selected from H97A, H97Q, H97S, H97T, S100aD, S100aE, and S100aV, and wherein CDR-H3 in said VEGF antibody does not consist of a CDR-H3 sequence set forth in FIGS. 12A to 12I .
Embodiment 44. The antibody or binding fragment of any one of embodiments 8-43, wherein CDR-H1 includes the substitution T30W, T30R or T30Q, and wherein CDR-H1 in said VEGF antibody does not consist of a CDR-H1 sequence set forth in FIGS. 12A to 12I .
Embodiment 45. The antibody or binding fragment of any one of embodiments 1-44, wherein CDR-H2 includes at least one substitution selected from Y53F, T58F, A61G, A61K, A61R, A61H, A61Y, K64G, K64E, R65L, R65T, R65A, R65E, and R65D, and wherein CDR-H2 in said VEGF antibody does not consist of a CDR-H2 sequence set forth in Tables FIGS. 12A to 12I .
Embodiment 46. The antibody or binding fragment of any one of embodiments 1-45, wherein CDR-H3 includes at least one substitution selected from Y98F and Y100eF, and wherein CDR-H3 in said VEGF antibody does not consist of a CDR-H3 sequence set forth in FIGS. 12A to 12I .
Embodiment 47. The antibody or binding fragment of any one of embodiments 1-18, wherein the heavy chain CDRs include a combination of substitutions selected from:
(a) N31F in CDR-H1, H97D in CDR-H3, Y99D in CDR-H3, and S100aG in CDR-H3;
(b) N31F in CDR-H1, H97P in CDR-H3, Y99D in CDR-H3, and S100aG in CDR-H3;
(c) N31F in CDR-H1, H97P in CDR-H3, and Y99E in CDR-H3;
(d) N31F in CDR-H1, H97E in CDR-H3, and Y99E in CDR-H3;
(e) N31F in CDR-H1, H97D in CDR-H3, and Y99E in CDR-H3;
(f) N31F in CDR-H1, H97E in CDR-H3, Y99D in CDR-H3, and S100aG in CDR-H3;
(g) N31F in CDR-H1, Y99D in CDR-H3, and S100aG in CDR-H3;
(h) N31F in CDR-H1, H97P in CDR-H3, and Y99D in CDR-H3;
(i) N31F in CDR-H1, H97D in CDR-H3, and S100aG in CDR-H3;
(j) N31F in CDR-H1 and S100aG in CDR-H3;
(k) N31F in CDR-H1, H97P in CDR-H3, and S100aG in CDR-H3.
Embodiment 48. The anti-VEGF antibody or anti-VEGF binding fragment of any one of embodiments 1 to 47, wherein the six CDRs altogether have up to 16, up to 15, up to 14, up to 13, up to 12, up to 11, up to 10, up to 9, up to 8, up to 7, up to 6, up to 5, or up to 4 amino acid substitutions as compared to CDR sequences of the antibody bevacizumab or the antibody ranibizumab.
Embodiment 49. The anti-VEGF antibody or anti-VEGF binding fragment of any one of embodiments 1 to 46, wherein any individual CDR has no more than three amino acid substitutions as compared to the corresponding CDR sequence of the antibody bevacizumab or the antibody ranibizumab.
Embodiment 50. The anti-VEGF antibody or anti-VEGF binding fragment of any one of embodiments 1 to 46, wherein any individual CDR has no more than two amino acid substitutions as compared to the corresponding CDR sequence of the antibody bevacizumab or the antibody ranibizumab.
Embodiment 51. The anti-VEGF antibody or anti-VEGF binding fragment of any one of embodiments 1 to 50 which is a monoclonal antibody or anti-VEGF binding fragment of a monoclonal antibody, respectively.
Embodiment 52. The antibody or binding fragment of any one of embodiments 1 to 51 which is a human or humanized antibody, or anti-VEGF binding fragment of a humanized or humanized antibody, respectively.
Embodiment 53. The antibody or binding fragment of any one of embodiments 1 to 52 which is an IgG.
Embodiment 54. The antibody or binding fragment of embodiment 53 which is an IgG1.
Embodiment 55. The antibody or binding fragment of embodiment 53 which is an IgG2.
Embodiment 56. The antibody or binding fragment of any one of embodiments 1 to 55 which is a dual-variable domain (DVD) immunoglobulin.
Embodiment 57. The antibody or binding fragment of embodiment 56 which has an anti-DLL4 variable binding domain.
Embodiment 58. The antibody or binding fragment of any one of embodiments 1 to 57 which includes one or more mutations in the Fc region that increase ADCC activity.
Embodiment 59. The antibody or binding fragment of any one of embodiments 1 to 58 which is non-fucosylated.
Embodiment 60. The antibody or binding fragment of any one of embodiments 1 to 59 which includes one or more mutations in the Fc region that increase binding to FcγR.
Embodiment 61. The antibody or binding fragment of any one of embodiments 1 to 59 which includes one or more mutations in the Fc region that increase binding to FcRn.
Embodiment 62. The antibody or binding fragment of any one of embodiments 1 to 54 which includes one or more mutations in the Fc region that decrease ADCC activity.
Embodiment 63. The antibody or binding fragment of any one of embodiments 1 to 62 which has, other than said one or more mutations, a VH sequence corresponding to SEQ ID NO:1 and a VL sequence corresponding to SEQ ID NO:2.
Embodiment 64. The antibody or binding fragment of any one of embodiments 1-15, 29-55, and 58-63 which has, other than said one or more mutations, a heavy chain sequence corresponding to SEQ ID NO:9 and a light chain sequence corresponding to SEQ ID NO:10.
Embodiment 65. The antibody or binding fragment of any one of embodiments 1 to 63 which has an affinity that is 1.5- to 50-fold greater than the affinity of an antibody having a VH sequence corresponding to SEQ ID NO:1 and a VL sequence corresponding to SEQ ID NO:2.
Embodiment 66. The antibody or binding fragment of any one of embodiments 1 to 63 which has an affinity that is 1.5- to 50-fold greater than the affinity of an antibody having a heavy chain sequence corresponding to SEQ ID NO:9 and a light chain sequence corresponding to SEQ ID NO:10.
Embodiment 67. The antibody or binding fragment of embodiment 65 which has a 2- to 30-fold greater than the affinity of an antibody having a VH sequence corresponding to SEQ ID NO:1 and a VL sequence corresponding to SEQ ID NO:2.
Embodiment 68. The antibody or binding fragment of embodiment 66 which has a 2- to 30-fold greater than the affinity of an antibody having a heavy chain sequence corresponding to SEQ ID NO:9 and a light chain sequence corresponding to SEQ ID NO:10
Embodiment 69. The antibody or binding fragment of any one of embodiments 65 to 68, wherein the affinity is a measure of KD as analyzed by a biosensor.
Embodiment 70. The antibody or binding fragment of any one of embodiments 1 to 69 which is purified.
Embodiment 71. The antibody or binding fragment of embodiment 70 which is purified to at least 85%, at least 90%, at least 95% or at least 98% homogeneity.
Embodiment 72. The antibody or binding fragment of any one of embodiments 1-71, wherein the heavy chain includes at least one substitution selected from A61F in CDR-H2, A61E in CDR-H2, A61D in CDR-H2, D62L in CDR-H2, D62G in CDR-H2, D62Q in CDR-H2, D62T in CDR-H2, D62K in CDR-H2, D62R in CDR-H2, D62E in CDR-H2, D62H in CDR-H2, K64S in CDR-H2, K64V in CDR-H2, K64Q in CDR-H2, R65V in CDR-H2, R65F in CDR-H2, R65H in CDR-H2, R65N in CDR-H2, R65S in CDR-H2, R65Q in CDR-H2, R65K in CDR-H2, R65I in CDR-H2, and Y98H in CDR-H3.
Embodiment 73. An antibody-drug conjugate comprising an anti-VEGF antibody or anti-VEGF binding fragment according to any one of embodiments 1 to 72.
Embodiment 74. A pharmaceutical composition comprising an anti-VEGF antibody or anti-VEGF binding fragment according to any one of embodiments 1 to 72 or an antibody-drug conjugate according to embodiment 73, and a pharmaceutically acceptable carrier.
Embodiment 75. A nucleic acid comprising a nucleotide sequence encoding anti-VEGF antibody or anti-VEGF binding fragment of any one of embodiments 1 to 72.
Embodiment 76. A vector comprising the nucleic acid of embodiment 75.
Embodiment 77. A prokaryotic host cell transformed with a vector according to embodiment 76.
Embodiment 78. A eukaryotic host cell transformed with a vector according to embodiment 76.
Embodiment 79. A eukaryotic host cell engineered to express the nucleotide sequence of embodiment 75.
Embodiment 80. The eukaryotic host cell of embodiment 79 which is a mammalian host cell.
Embodiment 81. A method of producing anti-VEGF antibody or anti-VEGF binding fragment, comprising: (a) culturing the eukaryotic host cell of embodiment 79 or embodiment 80 and (b) recovering the anti-VEGF antibody or anti-VEGF binding fragment antibody.
Embodiment 82. A method of treating cancer, comprising administering to a human patient in need thereof a therapeutically effective amount of anti-VEGF antibody or anti-VEGF binding fragment according to any one of embodiments 1 to 72, an antibody-drug conjugate according to embodiment 73, or a pharmaceutical composition according to embodiment 74.
Embodiment 83. The method of embodiment 82, wherein the cancer is metastatic carcinoma of the colon, metastatic carcinoma of the rectum, non-squamous non-small cell lung cancer, or metastatic HER2-negative breast cancer.
Embodiment 84. A variant of a reference anti-VEGF antibody or an anti-VEGF binding fragment of a reference antibody,
wherein said reference antibody comprises a VEGF heavy chain variable region comprising CDRs having amino acid sequences of SEQ ID NO:3 (CDR-H1), SEQ ID NO:4 (CDR-H2), and SEQ ID NO:5 (CDR-H3), and a VEGF light chain variable region comprising CDRs having amino acid sequences of SEQ ID NO:6 (CDR-L1), SEQ ID NO:7 (CDR-L2) and SEQ ID NO:8 (CDR-L3), wherein, in said variant Kabat 28 in CDR-H1 is G or Y, wherein said variant optionally comprises one or more additional CDR substitutions or combinations of substitutions selected from one or more of FIGS. 6, 7, 8, 9, 12A to 12I, 13-16, 21, 22 and 24-26 as compared to the CDRs of said reference antibody, and wherein the six CDRs of said variant altogether have up to 17 amino acid substitutions as compared to CDR sequences of the reference antibody.

Embodiment 85. A variant of a reference anti-VEGF antibody or an anti-VEGF binding fragment of a reference antibody,
wherein said reference antibody comprises a VEGF heavy chain variable region comprising CDRs having amino acid sequences of SEQ ID NO:3 (CDR-H1), SEQ ID NO:4 (CDR-H2), and SEQ ID NO:5 (CDR-H3), and a VEGF light chain variable region comprising CDRs having amino acid sequences of SEQ ID NO:6 (CDR-L1), SEQ ID NO:7 (CDR-L2) and SEQ ID NO:8 (CDR-L3), wherein, in said variant: a. Kabat 28 in CDR-H1 is G or Y and Kabat 31 in CDR-H1 is Y; b. Kabat 28 in CDR-H1 is G or Y and Kabat 97 in CDR-H3 is F; c. Kabat 28 in CDR-H1 is G or Y and Kabat 100a in CDR-H3 is Q or A or G or T; d. Kabat 31 in CDR-H1 is Y and Kabat 97 in CDR-H3 is F; e. Kabat 31 in CDR-H1 is Y and Kabat 100a in CDR-H3 is Q or A or G or T; f. Kabat 97 in CDR-H3 is F and Kabat 100a in CDR-H3 is Q or A or G or T; g. Kabat 28 in CFR-H1 is G, Kabat 31 in CDR-H1 is Y, and Kabat 100a in CDR-H3 is Q or A or G or T; wherein said variant optionally comprises one or more additional CDR substitutions or combinations of substitutions selected from one or more of FIGS. 6, 7, 8, 9, 19, 12A to 12I, 13-16, 21, 22, and 24-26 as compared to the CDRs of said reference antibody, and wherein the six CDRs of said variant altogether have up to 17 amino acid substitutions as compared to CDR sequences of the reference antibody.

Embodiment 86. A variant of a reference anti-VEGF antibody or an anti-VEGF binding fragment of a reference antibody,
wherein said reference antibody comprises a VEGF heavy chain variable region comprising CDRs having amino acid sequences of SEQ ID NO:3 (CDR-H1), SEQ ID NO:4 (CDR-H2), and SEQ ID NO:5 (CDR-H3), and a VEGF light chain variable region comprising CDRs having amino acid sequences of SEQ ID NO:6 (CDR-L1), SEQ ID NO:7 (CDR-L2) and SEQ ID NO:8 (CDR-L3), wherein, in said variant: a. Kabat 28 in CDR-H1 is G or Y or T; b. Kabat 31 in CDR-H1 is Y; c. Kabat 97 in CDR-H3 is F or H; and d. Kabat 100a in CDR-H3 is Q or A or G or T, wherein said variant optionally comprises one or more additional CDR substitutions or combinations of substitutions selected from one or more of FIGS. 6, 7, 8, 9, 19, 12A to 12I, 13-16, 21, 22 and 24-26 as compared to the CDRs of said reference antibody, and wherein the six CDRs of said variant altogether have up to 17 amino acid substitutions as compared to CDR sequences of the reference antibody.

Embodiment 87. A variant of a reference anti-VEGF antibody or an anti-VEGF binding fragment of a reference antibody,
wherein said reference antibody comprises a VEGF heavy chain variable region comprising CDRs having amino acid sequences of SEQ ID NO:3 (CDR-H1), SEQ ID NO:4 (CDR-H2), and SEQ ID NO:5 (CDR-H3), and a VEGF light chain variable region comprising CDRs having amino acid sequences of SEQ ID NO:6 (CDR-L1), SEQ ID NO:7 (CDR-L2) and SEQ ID NO:8 (CDR-L3), wherein, in said variant: a. Kabat 31 in CDR-H1 is Y; and b. Kabat 100a in CDR-H3 is A or Q or G or T, wherein said variant optionally comprises one or more additional CDR substitutions or combinations of substitutions selected from one or more of FIGS. 6, 7, 8, 9, 19, 12A to 12I, 13-16, 21, 22 and 24-26 as compared to the CDRs of said reference antibody, and wherein the six CDRs of said variant altogether have up to 17 amino acid substitutions as compared to CDR sequences of the reference antibody.

Embodiment 88. p The variant of embodiment 86 or embodiment 87, in which Kabat 28 in CDR-H1 is G.
Embodiment 89. The variant of embodiment 86 or embodiment 87, in which Kabat 28 in CDR-H1 is Y.
Embodiment 90. The variant of embodiment 86 or embodiment 87, in which Kabat 28 in CDR-H1 is T.
Embodiment 91. The variant of any one of embodiments 86 to 90, in which Kabat 97 in CDR-H3 is F.
Embodiment 92. The variant of any one of embodiments 86 to 90, in which Kabat 97 in CDR-H3 is H.
Embodiment 93. A variant of a reference anti-VEGF antibody or an anti-VEGF binding fragment of a reference antibody,
wherein said reference antibody comprises a VEGF heavy chain variable region comprising CDRs having amino acid sequences of SEQ ID NO:3 (CDR-H1), SEQ ID NO:4 (CDR-H2), and SEQ ID NO:5 (CDR-H3), and a VEGF light chain variable region comprising CDRs having amino acid sequences of SEQ ID NO:6 (CDR-L1), SEQ ID NO:7 (CDR-L2) and SEQ ID NO:8 (CDR-L3), wherein, in said variant: a. Kabat 28 in CDR-H1 is G or Y or T; b. Kabat 31 in CDR-H1 is Y or N; c. Kabat 97 in CDR-H3 is F or H; and d. Kabat 100a in CDR-H3 is Q or A or G or T, wherein said variant comprises amino acid substitutions in at least 2 of Kabat 28, Kabat 31, Kabat 97 and Kabat 100a as compared to the CDRs of the reference antibody, wherein said variant optionally comprises one or more CDR substitutions or combinations of substitution selected from one or more of FIGS. 6, 7, 8, 9, 19 , FIGS. 12A to 12I, 13-16, 21, 22 and 24-26 as compared to the CDRs of said reference antibody, and wherein the six CDRs of said variant altogether have up to 17 amino acid substitutions as compared to CDR sequences of the reference antibody.

Embodiment 94. The variant of embodiment 93, wherein said variant comprises amino acid substitutions in at least 2 of Kabat 28, Kabat 31, Kabat 97 and Kabat 100a as compared to the CDRs of the reference antibody.
Embodiment 95. The variant of embodiment 93, wherein said variant comprises amino acid substitutions in at least 3 of Kabat 28, Kabat 31, Kabat 97 and Kabat 100a as compared to the CDRs of the reference antibody.
Embodiment 96. The variant of any one of embodiments 93 to 95, in which Kabat 30 in CDR-H1 is N, W or T.
Embodiment 97. The variant of any one of embodiments 84 to 87 and 93 to 96, in which:
a. Kabat 28 in CDR-H1 is G; b. Kabat 31 in CDR-H1 is Y; c. Kabat 97 in CDR-H3 is F; and d. Kabat 100a in CDR-H3 is A.

98. The variant of any one of embodiments 84 to 94, in which:
a. Kabat 28 in CDR-H1 is G; b. Kabat 31 in CDR-H1 is Y; c. Kabat 97 in CDR-H3 is F; and d. Kabat 100a in CDR-H3 is Q.

Embodiment 99. The variant of any one of embodiments 84 to 94, in which:
a. Kabat 28 in CDR-H1 is G; b. Kabat 31 in CDR-H1 is Y; c. Kabat 97 in CDR-H3 is H; and d. Kabat 100a in CDR-H3 is Q.

Embodiment 100. The variant of any one of embodiments 84 to 94, in which:
a. Kabat 28 in CDR-H1 is Y; b. Kabat 31 in CDR-H1 is Y; c. Kabat 97 in CDR-H3 is H; and d. Kabat 100a in CDR-H3 is Q.

Embodiment 101. The variant of any one of embodiments 84 to 94, in which:
a. Kabat 28 in CDR-H1 is Y; b. Kabat 31 in CDR-H1 is Y; c. Kabat 97 in CDR-H3 is F; and d. Kabat 100a in CDR-H3 is Q.

Embodiment 102. The variant of any one of embodiments 84 to 94, in which:
a. Kabat 28 in CDR-H1 is G; b. Kabat 31 in CDR-H1 is Y; c. Kabat 97 in CDR-H3 is H; and d. Kabat 100a in CDR-H3 is A.

Embodiment 103. The variant of any one of embodiments 84 to 94, in which:
a. Kabat 28 in CDR-H1 is G; b. Kabat 31 in CDR-H1 is Y; c. Kabat 97 in CDR-H3 is H; and d. Kabat 100a in CDR-H3 is G.

104
The variant of any one of embodiments 84 to 103, in which Kabat 30 is T.
Embodiment 105. A variant of a reference anti-VEGF antibody or an anti-VEGF binding fragment of a reference antibody,
wherein said reference antibody comprises a VEGF heavy chain variable region comprising CDRs having amino acid sequences of SEQ ID NO:3 (CDR-H1), SEQ ID NO:4 (CDR-H2), and SEQ ID NO:5 (CDR-H3), and a VEGF light chain variable region comprising CDRs having amino acid sequences of SEQ ID NO:6 (CDR-L1), SEQ ID NO:7 (CDR-L2) and SEQ ID NO:8 (CDR-L3), wherein, in said variant: a. Kabat 28 in CDR-H1 is G or R or Y; and/or b. Kabat 30 in CDR-H1 is K or N; and/or c. Kabat 31 in CDR-H1 is L or W or Y; and/or d. Kabat 97 in CDR-H3 is A, wherein said variant optionally comprises one or more additional CDR substitutions or combinations of substitutions selected from one or more of FIGS. 6, 7, 8, 9, 19, 12A to 12I, 13-16, 21, 22 and 24-26 as compared to the CDRs of said reference antibody, and wherein the six CDRs of said variant altogether have up to 17 amino acid substitutions as compared to CDR sequences of the reference antibody.

Embodiment 106. A variant of a reference anti-VEGF antibody or an anti-VEGF binding fragment of a reference antibody,
wherein said reference antibody comprises a VEGF heavy chain variable region comprising CDRs having amino acid sequences of SEQ ID NO:3 (CDR-H1), SEQ ID NO:4 (CDR-H2), and SEQ ID NO:5 (CDR-H3), and a VEGF light chain variable region comprising CDRs having amino acid sequences of SEQ ID NO:6 (CDR-L1), SEQ ID NO:7 (CDR-L2) and SEQ ID NO:8 (CDR-L3), wherein, in said variant: a. Kabat 97 in CDR-H3 is F; or b. Kabat 100a in CDR-H3 is A or Q, wherein said variant optionally comprises one or more additional CDR substitutions or combinations of substitutions selected from one or more of FIGS. 6, 7, 8, 9, 19, 12A to 12I, 13-16, 21, 22 and 24-26 as compared to the CDRs of said reference antibody, and wherein the six CDRs of said variant altogether have up to 17 amino acid substitutions as compared to CDR sequences of the reference antibody.

Embodiment 107. The variant of embodiment 105 or embodiment 106 in which Kabat 28 is G.
Embodiment 108. The variant of embodiment 105 or embodiment 106 in which Kabat 28 is R.
Embodiment 109. The variant of embodiment 105 or embodiment 106 in which Kabat 28 is Y.
Embodiment 110. The variant of any one of embodiments 107 to 109 in which Kabat 30 is K.
Embodiment 111. The variant of any one of embodiments 107 to 109 in which Kabat 30 is N.
Embodiment 112. The variant of any one of embodiments 107 to 109 in which Kabat 30 is R.
Embodiment 113. The variant of any one of embodiments 107 to 109 in which Kabat 30 is W.
Embodiment 114. The variant of any one of embodiments 107 to 113 in which Kabat 31 is H.
Embodiment 115. The variant of any one of embodiments 107 to 113 in which Kabat 31 is L.
Embodiment 116. The variant of any one of embodiments 107 to 113 in which Kabat 31 is W.
Embodiment 117. The variant of any one of embodiments 107 to 113 in which Kabat 31 is Y.
Embodiment 118. The variant of any one of embodiments 107 to 113 in which Kabat 31 is F.
Embodiment 119. The variant of any one of embodiments 107 to 118 in which Kabat 97 is A.
Embodiment 120. The variant of any one of embodiments 107 to 118 in which Kabat 97 is D.
Embodiment 121. The variant of any one of embodiments 107 to 118 in which Kabat 97 is E.
Embodiment 122. The variant of any one of embodiments 107 to 118 in which Kabat 97 is F.
Embodiment 123. The variant of any one of embodiments 107 to 118 in which Kabat 97 is P.
Embodiment 124. The variant of any one of embodiments 107 to 118 in which Kabat 97 is Y.
Embodiment 125. The variant of any one of embodiments 107 to 124 in which Kabat 100a is Q.
Embodiment 126. The variant of any one of embodiments 107 to 124 in which Kabat 100a is T.
Embodiment 127. The variant of any one of embodiments 107 to 124 in which Kabat 100a is A.
Embodiment 128. The variant of any one of embodiments 107 to 124 in which Kabat 100a is G.
Embodiment 129. The variant of any of embodiments 84 to 128 which is a multi-specific antibody in which said VEGF heavy and light chain variable regions together form a VEGF binding portion and which further comprises a second binding portion, said second binding portion comprising second heavy chain and light chain variable regions which together bind to a second target.
Embodiment 130. The variant of embodiment 129, which is a DVD-Ig.
Embodiment 131. A variant of a reference anti-VEGF antibody or an anti-VEGF binding fragment of a reference antibody,
wherein said reference anti-VEGF antibody comprises an anti-VEGF heavy chain variable region comprising CDRs having amino acid sequences of SEQ ID NO:3 (CDR-H1), SEQ ID NO:4 (CDR-H2), and SEQ ID NO:5 (CDR-H3) and an anti-VEGF light chain variable region comprising CDRs having amino acid sequences of SEQ ID NO:6 (CDR-L1), SEQ ID NO:7 (CDR-L2) and SEQ ID NO:8, wherein, in said variant: a. Kabat 31 in CDR-H1 is F, and/or b. Kabat 53 in CDR-H2 is F; and/or c. Kabat 64 in CDR-H2 is S or Q; and/or d. Kabat 97 in CDR-H3 is D or E or P; and/or e. Kabat 98 in CDR-H3 is F; and/or f. Kabat 99 in CDR-H3 is D or E; and/or g. Kabat 100a in CDR-H3 is G; and/or h. Kabat 51 in CDR-L2 is A; wherein said variant optionally comprises one or more additional CDR substitutions or combinations of substitutions selected from one or more of FIGS. 6, 7, 8, 9, 19, 12A to 12I, 13-16, 21, 22 and 24-26 as compared to the CDRs of said reference antibody, and wherein the six CDRs of said variant altogether have up to 17 amino acid substitutions as compared to CDR sequences of the reference antibody; and wherein said variant is a multi-specific antibody in which said VEGF heavy and light chain variable regions together form a VEGF binding portion and which further comprises a second binding portion, said second binding portion comprising second heavy chain and light chain variable regions which together bind to a second target.

Embodiment 132. A variant of a reference anti-VEGF antibody or an anti-VEGF binding fragment of a reference antibody,
wherein said reference anti-VEGF antibody comprises an anti-VEGF heavy chain variable region comprising CDRs having amino acid sequences of SEQ ID NO:3 (CDR-H1), SEQ ID NO:4 (CDR-H2), and SEQ ID NO:5 (CDR-H3) and an anti-VEGF light chain variable region comprising CDRs having amino acid sequences of SEQ ID NO:6 (CDR-L1), SEQ ID NO:7 (CDR-L2) and SEQ ID NO:8, wherein, in said variant: a. Kabat 61 in CDR-H2 is F or E or D, and/or b. Kabat 62 in CDR-H2 is G or L or Q or T or K or R or E or H; and/or c. Kabat 64 in CDR-H2 is S or V or Q; and/or d. Kabat 65 in CDR-H2 is V or F or H or N or S or Q or K or I; and/or e. Kabat 98 in CDR-H3 is H; wherein said variant optionally comprises one or more additional CDR substitutions or combinations of substitutions selected from one or more of FIGS. 6, 7, 8, 9, 19, 12A to 12I, 13-16, 21, 22 and 24-26 as compared to the CDRs of said reference antibody, and wherein the six CDRs of said variant altogether have up to 17 amino acid substitutions as compared to CDR sequences of the reference antibody; and wherein said variant is a multi-specific antibody in which said VEGF heavy and light chain variable regions together form a VEGF binding portion and which further comprises a second binding portion, said second binding portion comprising second heavy chain and light chain variable regions which together bind to a second target.

Embodiment 133. A variant of a reference anti-VEGF antibody or an anti-VEGF binding fragment of a reference antibody,
wherein said reference anti-VEGF antibody comprises an anti-VEGF heavy chain variable region comprising CDRs having amino acid sequences of SEQ ID NO:3 (CDR-H1), SEQ ID NO:4 (CDR-H2), and SEQ ID NO:5 (CDR-H3) and an anti-VEGF light chain variable region comprising CDRs having amino acid sequences of SEQ ID NO:6 (CDR-L1), SEQ ID NO:7 (CDR-L2) and SEQ ID NO:8, wherein, in said variant: a. Kabat 28 in CDR-H1 is G or R or Y; and/or b. Kabat 30 in CDR-H1 is K or N or R or W; and/or c. Kabat 31 in CDR-H1 is F or H or L or W or Y; and/or d. Kabat 97 in CDR-H3 is A or D or E or F or P or Y; and/or e. Kabat 100a in CDR-H3 is A or G or Q or T, wherein said variant optionally comprises one or more additional CDR substitutions or combinations of substitutions selected from one or more of FIGS. 6, 7, 8, 9, 19 , FIGS. 12A to 12I, 13-16, 21, 22 and 24-26 as compared to the CDRs of said reference antibody, and wherein the six CDRs of said variant altogether have up to 17 amino acid substitutions as compared to CDR sequences of the reference antibody; and wherein said variant is a multi-specific antibody in which said VEGF heavy and light chain variable regions together form a VEGF binding portion and which further comprises a second binding portion, said second binding portion comprising second heavy chain and light chain variable regions which together bind to a second target.

Embodiment 134. The variant of any one of embodiments 131 to 133, which is a DVD-Ig.
Embodiment 135. The variant of any one of embodiments 131 to 134, wherein, in said variant binding VEGF portion:
a. Kabat 31 in CDR-H1 is F, Kabat 97 in CDR-H3 is D, Kabat 99 in CDR-H3 is D, and Kabat 100a in CDR-H3 is G; b. Kabat 31 in CDR-H1 is F, Kabat 97 in CDR-H3 is P, Kabat 99 in CDR-H3 is D, and Kabat 100a in CDR-H3 is G; c. Kabat 31 in CDR-H1 is F, Kabat 97 in CDR-H3 is P, and Kabat 99 in CDR-H3 is E; d. Kabat 31 in CDR-H1 is F, Kabat 97 in CDR-H3 is E, and Kabat 99 in CDR-H3 is E; e. Kabat 31 in CDR-H1 is F, Kabat 97 in CDR-H3 is D, and Kabat 99 in CDR-H3 is E; f. Kabat 31 in CDR-H1 is F, Kabat 97 in CDR-H3 is E, Kabat 99 in CDR-H3 is D, and Kabat 100a in CDR-H3 is G; g. Kabat 31 in CDR-H1 is F, Kabat 99 in CDR-H3 is D, and Kabat 100a in CDR-H3 is G; h. Kabat 31 in CDR-H1 is F, Kabat 97 in CDR-H3 is P, and Kabat 99 in CDR-H3 is D; i. Kabat 31 in CDR-H1 is F, Kabat 97 in CDR-H3 is D, and Kabat 100a in CDR-H3 is G; j. Kabat 31 in CDR-H1 is F and Kabat 100a in CDR-H3 is G; k. Kabat 31 in CDR-H1 is F, H97P in CDR-H3, and Kabat 100a in CDR-H3 is G.

Embodiment 136. The variant of any one of embodiments 129 to 135, wherein the second binding portion is on the outside of the VEGF binding portion.
Embodiment 137. The variant of any one of embodiments 129 to 135, wherein the VEGF binding portion is on the outside of the second binding portion.
Embodiment 138. The variant of any one of embodiments 129 to 137, wherein the VEGF and second heavy chain variable regions are connected via a short linker, optionally ASTKGP (SEQ ID NO:427) or GGGGSG (SEQ ID NO:430).
Embodiment 139. The variant of any one of embodiments 129 to 137, wherein the VEGF and second heavy chain variable regions are connected via a medium linker, optionally GGGGSGGGGS (SEQ ID NO:431).
Embodiment 140. The variant of any one of embodiments 129 to 137, wherein the VEGF and second heavy chain variable regions are connected via a long linker, optionally ASTKGPSVFPLAP (SEQ ID NO:429) or GGGGSGGGGSGGGG (SEQ ID NO:432).
Embodiment 141. The variant of any one of embodiments 129 to 140, wherein the VEGF and second light chain variable regions are connected via a short linker, optionally TVAAP (SEQ ID NO:418), QPKAAP (SEQ ID NO:421), or GGSGG (SEQ ID NO:423).
Embodiment 142. The variant of any one of embodiments 129 to 140, wherein the VEGF and second light chain variable regions are connected via a medium linker, optionally GGSGGGGSG (SEQ ID NO:424).
Embodiment 143. The variant of any one of embodiments 129 to 140, wherein the VEGF and second light chain variable regions are connected via a long linker, optionally TVAAPSVFIFPP (SEQ ID NO:420), QPKAAPSVTLFPP (SEQ ID NO:422), or GGSGGGGSGGGGS (SEQ ID NO:425).
Embodiment 144. The variant of any one of embodiments 129 to 143, wherein the second target is DLL4.
Embodiment 145. The variant of embodiment 144, wherein the CDRs of the second heavy and light chain variable regions have the CDR sequences of the CDRs of DLL4 binding portions of SEQ ID NO:413 and SEQ ID NO:414.
Embodiment 146. The variant of embodiment 145, wherein the second heavy and light chain variable regions have the sequences of the DLL4 binding portions of SEQ ID NO:413 and SEQ ID NO:414.
Embodiment 147. The variant of any one of embodiments 84 to 146, wherein the six CDRs altogether have up to 16, up to 15, up to 14, up to 13, up to 12, up to 11, up to 10, up to 9, up to 8, up to 7, up to 6, up to 5, or up to 4 amino acid substitutions as compared to CDR sequences of the reference antibody.
Embodiment 148. The variant of any one of embodiments 84 to 147, wherein any individual CDR has no more than three amino acid substitutions as compared to the corresponding CDR sequence of the reference antibody.
Embodiment 149. The variant of any one of embodiments 84 to 148, wherein any individual CDR has no more than two amino acid substitutions as compared to the corresponding CDR sequence of the reference antibody.
Embodiment 150. The variant of any one of embodiments 84 to 149, which is a monoclonal antibody or anti-VEGF binding fragment of a monoclonal antibody, respectively.
Embodiment 151. The variant of any one of embodiments 84 to 150 which is a human or humanized antibody, or anti-VEGF binding fragment of a humanized or humanized antibody, respectively.
Embodiment 152. The variant of any one of embodiments 84 to 151 which is an IgG.
Embodiment 153. The variant of embodiment 152 which is an IgG1.
Embodiment 154. The variant of embodiment 152 which is an IgG2.
Embodiment 155. The variant of any one of embodiments 84 to 154 which includes one or more mutations in the Fc region that increase ADCC activity.
Embodiment 156. The variant of any one of embodiments 84 to 155 which is non-fucosylated.
Embodiment 157. The variant of any one of embodiments 84 to 156 which includes one or more mutations in the Fc region that increase binding to FcγR.
Embodiment 158. The variant of any one of embodiments 84 to 156 which includes one or more mutations in the Fc region that increase binding to FcRn.
Embodiment 159. The variant of any one of embodiments 84 to 154 which includes one or more mutations in the Fc that enforce heterodimerization.
Embodiment 160. The variant of any one of embodiments 84 to 154 which includes one or more mutations in the Fc region that decrease ADCC activity.
Embodiment 161. The variant of any one of embodiments 84 to 160 which has, other than said one or more specified CDR amino acids, a VH sequence of SEQ ID NO:1.
Embodiment 162. The variant of embodiment 161 which has, other than said one or more specified CDR amino acids, a VL sequence of SEQ ID NO:2.
Embodiment 163. The variant of embodiment 161 which has, other than said one or more specified CDR amino acids, a VL sequence of the VL portion of SEQ ID NO:10.
Embodiment 164. The variant of any one of embodiments 84 to 160, which has, other than said one or more specified CDR amino acids, a VH sequence of the VH portion of SEQ ID NO:9.
Embodiment 165. The variant of embodiment 164 which has, other than said one or more specified CDR amino acids, a VL sequence of SEQ ID NO:2.
Embodiment 166. The variant of embodiment 164 which has, other than said one or more specified CDR amino acids, a VL sequence of the VL portion of SEQ ID NO:10.
Embodiment 167. The variant of any one of embodiments 84 to 166 which has an affinity that is at least 1.2-fold, at least 1.5 fold or at least 2-fold, and up to 2-fold, up to 3-fold or up to 10-fold the affinity of an antibody having (a) a VH sequence of SEQ ID NO:1 and (b) a VL sequence of (i) SEQ ID NO:2 or (ii) the VL portion of SEQ ID NO:10.
Embodiment 168. The variant of any one of embodiments 84 to 166 which has an affinity that is at least 1.2-fold, at least 1.5 fold or at least 2-fold, and up to 2-fold, up to 3-fold or up to 10-fold the affinity of an antibody having (a) a VH sequence of the VH portion of SEQ ID NO:9 and (b) a VL sequence of (i) SEQ ID NO:2 or (ii) the VL portion of SEQ ID NO:10.
Embodiment 169. The variant of embodiment 167 which has an affinity that is 2- to 3-fold the affinity of an antibody having (a) a VH sequence of SEQ ID NO:1 and (b) a VL sequence of (i) SEQ ID NO:2 or (ii) the VL portion of SEQ ID NO:10.
Embodiment 170. The variant of embodiment 168 which has an affinity that is 2- to 3-fold the affinity of an antibody having (a) a VH sequence of the VH portion of SEQ ID NO:9 and (b) a VL sequence of (i) SEQ ID NO:2 or (ii) the VL portion of SEQ ID NO:10.
Embodiment 171. The variant of any one of embodiments 167 to 170, wherein the affinity is a measure of KD as analyzed by a biosensor.
Embodiment 172. The variant of any one of embodiments 84 to 171 which is purified.
Embodiment 173. The variant of embodiment 172 which is purified to at least 85%, at least 90%, at least 95% or at least 98% homogeneity.
Embodiment 174. An antibody-drug conjugate comprising an anti-VEGF antibody or anti-VEGF binding fragment according to any one of embodiments 84 to 173.
Embodiment 175. A pharmaceutical composition comprising an anti-VEGF antibody or anti-VEGF binding fragment according to any one of embodiments 84 to 173 or an antibody-drug conjugate according to embodiment 174, and a pharmaceutically acceptable carrier.
Embodiment 176. A nucleic acid comprising a nucleotide sequence encoding variant of any one of embodiments 84 to 173.
Embodiment 177. A vector comprising the nucleic acid of embodiment 176.
Embodiment 178. A prokaryotic host cell transformed with a vector according to embodiment 177.
Embodiment 179. A eukaryotic host cell transformed with a vector according to embodiment 177.
Embodiment 180. A eukaryotic host cell engineered to express the nucleotide sequence of embodiment 176.
Embodiment 181. The eukaryotic host cell of embodiment 180 which is a mammalian host cell.
Embodiment 182. A method of producing anti-VEGF antibody or anti-VEGF binding fragment, comprising: (a) culturing the eukaryotic host cell of embodiment 180 or embodiment 181 and (b) recovering the anti-VEGF antibody or anti-VEGF binding fragment antibody.
Embodiment 183. A method of treating cancer, comprising administering to a human patient in need thereof a therapeutically effective amount of anti-VEGF antibody or anti-VEGF binding fragment according to any one of embodiments 84 to 173, an antibody-drug conjugate according to embodiment 174, or a pharmaceutical composition according to embodiment 175.
Embodiment 184. The method of embodiment 183, wherein the cancer is metastatic carcinoma of the colon, metastatic carcinoma of the rectum, non-squamous non-small cell lung cancer, or metastatic HER2-negative breast cancer.
Embodiment 185. The method of embodiment 184, wherein the cancer is non-squamous non-small cell lung cancer which is unresectable, locally advanced, recurrent or metastatic.
Embodiment 186. A method of treating a retinal condition selected from age-related macular degeneration, edema following retinal vein occlusion and diabetic macular edema, comprising administering to a human patient in need thereof a therapeutically effective amount of anti-VEGF antibody or anti-VEGF binding fragment according to any one of embodiments 84 to 173, an antibody-drug conjugate according to embodiment 174, or a pharmaceutical composition according to embodiment 175.
Embodiment 187. The method of embodiment 186, wherein the retinal condition is age related macular degeneration.
Embodiment 188. The method of embodiment 187, wherein the retinal condition is wet age related macular degeneration.
Embodiment 189. The method of embodiment 187, wherein the retinal condition is dry age related macular degeneration.
Embodiment 190. The method of embodiment 186, wherein the retinal condition is edema following retinal vein occlusion.
Embodiment 191. The method of embodiment 186, wherein the retinal condition is diabetic macular edema.
Embodiment 192. A method of treating an immune disorder, comprising administering to a human patient in need thereof a therapeutically effective amount of anti-VEGF antibody or anti-VEGF binding fragment according to any one of embodiments 84 to 173, an antibody-drug conjugate according to embodiment 174, or a pharmaceutical composition according to embodiment 175.
Embodiment 193. The method of embodiment 192, wherein the immune disorder is rheumatoid arthritis or Grave's disease.
All publications, patents, patent applications and other documents cited in this application are hereby incorporated by reference in their entireties for all purposes to the same extent as if each individual publication, patent, patent application or other document were individually indicated to be incorporated by reference for all purposes. While various specific embodiments have been illustrated and described, it will be appreciated that various changes can be made without departing from the spirit and scope of the invention(s).