(en)The invention relates to a method for determining whether a test compound binds preferentially to a membrane receptor R1 or to a membrane receptor R2, these receptors being known to be expressed on the surface of the cells in monomeric, homodimeric or heterodimeric form. This method is applied using one or two FRET partner pairs.

1.ApplicationNumber: US-201013388150-A
1.PublishNumber: US-2012190048-A1
2.Date Publish: 20120726
3.Inventor: TRINQUET ERIC
ZWIER JURRIAAN
MATHIS GERARD
PIN JEAN-PHILIPPE
DURROUX THIERRY

4.Inventor Harmonized: TRINQUET ERIC(FR)
ZWIER JURRIAAN(FR)
MATHIS GERARD(FR)
PIN JEAN-PHILIPPE(FR)
DURROUX THIERRY(FR)

5.Country: US
6.Claims:
(en)The invention relates to a method for determining whether a test compound binds preferentially to a membrane receptor R1 or to a membrane receptor R2, these receptors being known to be expressed on the surface of the cells in monomeric, homodimeric or heterodimeric form. This method is applied using one or two FRET partner pairs.

7.Description:
(en)PRIOR ART
The invention relates to the area of screening of compounds capable of binding to membrane receptors.
The binding of extracellular ligands to their membrane receptors constitutes the first step in the transduction of biochemical signals from the exterior to the interior of living cells and is therefore an essential element in the regulation of these cells. The membrane receptors therefore constitute a target of choice for screening new molecules capable of regulating biological processes, in particular for screening new medicinal products.
It has been established that membrane receptors can function not only alone, but also in the form of homodimers or heterodimers (S. R. George et al., Nature drug discovery 1, 808-820 (2002) and G. Milligan, Biochimica et Biophysica Acta 1768, 825-835). Certain membrane receptors are only functional in the form of dimer, this is the case for example for the receptor of gamma-aminobutyric acid (GABAB), which consists of a subunit GABAB1 and GABAB2. The majority of metabotropic glutamate receptors function in the form of homodimers.
There are numerous methods for determining whether a given compound does or does not bind to a membrane receptor. The most classical method consists of labeling the test compound with a radioactive atom (tritium, iodine 125), putting it in contact with the cells expressing the receptor of interest, and counting the radioactivity fixed to the cell after washing. It is also common to label a known ligand of a receptor, and measure the capacity of a test compound to compete with this labeled ligand for the binding site to the receptor. These methods have several drawbacks: they are based on the use of radioactive compounds, which poses problems of safety and waste treatment, and they can be difficult to employ on high-throughput platforms, i.e. when rapid testing of thousands of compounds is required. They also do not allow information to be obtained regarding the receptor to which the test compounds bind, in particular it is impossible to determine whether the test compound binds to one type of receptor or to several, to a monomeric receptor or to a dimeric receptor.
Other methods have been described, notably methods based on the use of fluorescent compounds.
Fluorescence correlation spectroscopy (“FCS”) makes it possible for example to measure the fluctuations of fluorescence of molecules diffusing in a medium exposed to a confocal laser. As the time of diffusion of these molecules is dependent on the coefficient of diffusion, which is itself correlated with the size of said molecules, the data collected by FCS can be used for differentiating molecules with rapid diffusion from those with slow diffusion, and consequently the ligands bound to their receptor from those that are not. This technique has been applied for example to investigation of galanin receptors, using galanin labeled with rhodamine (Pramanik, A. et al., 2001. Fluorescence correlation spectroscopy detects galanin receptor diversity on insulinoma cells. Biochemistry, 40(36), 10839-10845).
Handl, H. L. et al. (2004. Lanthanide-based time-resolved fluorescence of in cyto ligand-receptor interactions, Analytical Biochemistry, 330(2), 242-250) described an alternative to investigations of binding by competition with radioactive ligands, based on the DELFIA (Diffusion enhanced lanthanide fluoroimmunoassay) technique. According to this technique, a ligand labeled with a weakly fluorescent lanthanide chelate is put in contact with a cell expressing the receptors under investigation. After a washing step that is intended to remove the unbound ligand, a solution intended to amplify the fluorescence of the lanthanide is added to the measuring medium. This approach was used by the authors in experiments of binding of a derivative of α-MSH conjugated to a chelate of europium, with the melanocortin receptor MC4.
Fluorescence polarization (FP) is another technique that has been used as an alternative to the use of radiolabeled ligands: Gagne, A et al. for example described the preparation of ligands of G protein-coupled receptors (GPCR) labeled with a fluorophore known by the trade name Bodypy™. In particular, ligands of the receptors of melanin concentrating hormone, of bradykinin and of melanocortin were labeled with this fluorophore and their binding to these receptors was investigated by measuring the variations in polarization of the fluorescence emitted by the measuring medium (2002. Use of fluorescence polarization detection for the measurement of fluopeptide binding to G protein-coupled receptors, Journal of Receptor and Signal Transduction Research, 22(1-4), 333-343).
The invention proposes to provide a novel method of screening of compounds capable of binding to membrane receptors, in particular for determining whether a compound binds preferentially to dimers of receptors, notably heterodimers of GPCR.
SUMMARY OF THE INVENTION
The invention relates to a method for determining whether a test compound binds preferentially to a membrane receptor R1 or to a membrane receptor R2, these receptors being known to be expressed on the surface of the cells in monomeric or homodimeric form, i.e. they are present on the surface of the cells in the form of monomers R1 or R2, or in the form of homodimers R1R1 or R2R2. This method also makes it possible to determine whether a test compound binds indiscriminately to these receptors regardless of their state of dimerization.
This method can also be employed with receptors forming oligomers, in particular with receptors forming trimers, tetramers or pentamers.
The method according to the invention also makes it possible to determine whether a test compound binds to heterodimers R1R2, R1 and R2 representing receptors known to he expressed on the surface of the cells in monomeric, homodimeric or heterodimeric form, i.e. they are present on the surface of the cells in the form of monomers R1 or R2, in the form of homodimers R1R1 or R2R2, or in the form of heterodimers R1R2.
In this aspect of the invention, it is possible not only to determine whether the test compound binds to heterodimers R1R2, but also to establish whether the test compound also binds to monomers R2 and to homodimers R2R2, or whether it binds specifically to monomers R2 or to homodimers R2R2 and not to heterodimers R1R2.
The method according to the invention is based on the use of FRET partner pairs, one of the members of which is conjugated to a ligand of one or of both receptors under investigation, and the other is conjugated to one of the receptors under investigation. This method employs one or two FRET partner pairs.



BRIEF DESCRIPTION OF THE DRAWINGS
FIGS. 1 and 2 represent an aspect of the invention where the receptors R1 and R2 are expressed on the surface of the cells in monomeric or homodimeric form.
FIGS. 3 and 4 represent an aspect of the invention where the receptors R1 and R2 are expressed on the surface of the cells in monomeric, homodimeric or heterodimeric form.
FIG. 5 represents the FLAG-ST-V2R plasmid.
FIG. 6 represents the FLAG-SNAP-delta Opioid plasmid.
FIG. 7 represents the FLAG-Halo-Dopamine D2 plasmid.
FIG. 8 represents determination of the dissociation constant of the opioid receptor red antagonist on the Delta Opioid receptor of the Delta Opioid/Dopamine D2 heterodimer. The dopamine D2 receptor is labeled with HALO-Lumi4Tb thus permitting visualization of fixation of the fluorescent ligand on the heterodimer.
FIG. 9 represents determination of the dissociation constant of the red antagonist of the dopamine D2 receptor on the Dopamine D2 receptor of the Delta Opioid/Dopamine D2 heterodimer. The Delta Opioid receptor is labeled with SNAP-Lumi4Tb thus permitting visualization of fixation of the fluorescent ligand on the heterodimer.
FIG. 10 represents screening of specific compounds of the Delta Opioid receptor implicated in the heterodimer with Dopamine D2. The Dopamine D2 receptor is labeled with HALO-Lumi4Tb thus permitting visualization of competition specifically on the heterodimers.
FIG. 11 represents screening of specific compounds of the Dopamine D2 receptor implicated in the heterodimer with Delta Opioid. The Delta Opioid receptor is labeled with SNAP-Lumi4Tb thus permitting visualization of competition on the Dopamine D2 receptors of the heterodimers.



DETAILED DESCRIPTION
According to a first aspect, the method of the invention is applied on membrane receptors R1 and R2 expressed in the cell membranes, these receptors being known to be present in monomeric, homodimeric, but not heterodimeric form, and makes it possible to determine whether a test compound binds preferentially to one or other of these receptors regardless of their state of dimerization, or to determine whether this compound binds indiscriminately to these receptors regardless of their state of dimerization.
According to one embodiment of this first aspect (shown in FIG. 1 ), the method according to the invention is a method for determining the binding of a test compound with receptors R1 and R2 expressed in the cell membranes, these receptors being known to be present in homodimeric but not heterodimeric form, said method comprising the following steps:
(a) Labeling of the receptor R1 covalently or noncovalently with a first energy donor compound D1 and of the receptor R2 covalently or noncovalently with a second energy donor compound D2, (b) Addition, to the measuring medium, of a ligand known to be capable of binding to the receptors R1, R2 and to the homodimers R1R1 and R2R2, said ligand being labeled with an energy acceptor compound A, and the pairs (D1,A) and (D2,A) each forming FRET partner pairs, (c) Measurement of the total luminescence L tot emitted at the emission wavelength of the acceptor compound A, (d) Addition of a compound extinguishing the FRET signal of the pair (D1,A), (e) Measurement of the luminescence L 2 emitted at the emission wavelength of the acceptor compound A, (f) Determination of the luminescence L 1 due to the pair (D1,A) from the formula




L
1
=L
tot
−L
2


the sequence of steps (c) to (f) being applied in the presence and in the absence of the test compound.
According to this embodiment:
disappearance of the luminescence L1 and maintenance of the luminescence L2 in the presence of the test compound are representative of the binding of the test compound to the receptor R1 and to the homodimer R1R1,
disappearance of the luminescence L2 and maintenance of the luminescence L1 in the presence of the test compound are representative of the binding of the test compound to the receptor R2 and to the homodimer R2R2,
disappearance of the luminescence L1 and disappearance of the luminescence L2 in the presence of the test compound are representative of a compound binding both to the receptors R1, R2, and to the homodimers R1R1 or R2R2,
The FRET extinguishing compounds required for application of this method are described in international patent application WO 2007/116069. Preferably, the donor compound D1 is a lanthanide complex, in particular a lanthanide cryptate or chelate (such as a cryptate or a chelate of terbium or of europium) and the FRET extinguishing compound of the pair (D1,A) is a compound having a binding domain with D1, in particular a specific antibody of the lanthanide complex D1.
According to another embodiment of the first aspect (shown in FIG. 2 ), the method according to the invention can be applied by labeling the receptors R1 and R2 with FRET acceptor compounds A1 and A2 and the ligand with a donor D1, which corresponds to the format opposite to that presented in the preceding embodiment. Thus, according to this embodiment, the two FRET partner pairs used are (D,A1) and (D,A2).
This second embodiment therefore relates to a method for determining the binding of a test compound with membrane receptors R1 and R2 expressed in the cell membranes, these receptors being known to be present in homodimeric but not heterodimeric form, said method comprising the following steps:
(a) Labeling of the receptor R1 covalently or noncovalently with a first energy acceptor compound A 1 and of the receptor R2 covalently or noncovalently with a second energy acceptor compound A2, A1 and A2 having different emission wavelengths, (b) Addition, to the measuring medium, of a ligand known to be capable of binding to the receptors R1, R2 and to the homodimers R1R1 and R2R2, this ligand being labeled with an energy donor compound D, and the pairs (D,A1) and (D,A2) each forming FRET partner pairs, (c) Measurement of the luminescence L 1 emitted at the emission wavelength of the acceptor compound A1 on the one hand, and of the luminescence L 2 emitted at the emission wavelength of the acceptor compound A2 on the other hand, each in the presence and in the absence of the test compound.

According to this second embodiment:
disappearance of the luminescence L1 and maintenance of the luminescence L2 in the presence of the test compound are representative of the binding of the test compound to the receptor R1 and to the homodimer R1R1,
disappearance of the luminescence L2 and maintenance of the luminescence L1 in the presence of the test compound are representative of the binding of the test compound to the receptor R2 and to the homodimer R2R2,
disappearance of the luminescence L1 and disappearance of the luminescence L2 in the presence of the test compound are representative of a compound binding both to the receptors R1, R2, and to the homodimers R1 R1 or R2R2.
According to a second aspect, the method of the invention is applied on membrane receptors R1 and R2 expressed in the cell membranes, these receptors being known to be present in heterodimeric, and optionally monomeric and/or homodimeric form, and makes it possible to determine (i) whether a test compound binds to the heterodimers R1R2, and (ii) whether a test compound binds specifically to the heterodimers R1R2, or else whether it binds specifically to the receptor R2 and to the homodimer R2R2, or whether it binds both to the receptor R2, to the homodimer R2R2 and to the heterodimer R1 R2.
According to one embodiment of this second aspect (shown in FIG. 3 ), the method according to the invention is a method for determining the binding of a test compound with membrane receptors R1 and R2 expressed in the cell membranes, these receptors being known to be present in heterodimeric form (optionally also in monomeric or homodimeric form), said method comprising the following steps:
(a) Labeling of the receptor R1 covalently or noncovalently with the first member of a FRET partner pair (D,A1), in which D is the energy donor compound and A1 is the energy acceptor compound, (b) Addition, to the measuring medium, of a known ligand of R2 capable of binding to the heterodimer R1R2 but neither to the receptor R1 nor to the homodimer R1R1, said ligand being labeled with the second member of said FRET partner pair, (c) Measurement of the luminescence L 1 emitted at the emission wavelength of the acceptor compound A1, in the presence and in the absence of the test compound.

According to this embodiment, disappearance of the luminescence L1 in the presence of the test compound is representative of the binding of this compound to the heterodimer R1R2.
The first member of the FRET partner pair, which labels the receptor R1, can be an energy donor compound D and the second member, which is bound to the ligand, can be an acceptor compound A1. The reversed format can also be used, namely, the first member of the FRET partner pair, which labels R1, can be an energy acceptor compound A1 and the second member of this pair, bound to the ligand, can be an energy donor compound D.
According to other embodiment of the second aspect (shown in FIG. 4 ), the ligand is conjugated with a donor compound D, the receptor R1 is labeled with an acceptor compound A1, and the receptor R2 is labeled with an energy acceptor compound A2. In the absence of the test compound, we can measure the luminescence L1 or L2 emitted at the emission wavelength of the acceptor compound A1 or A2, respectively. In this embodiment, the signal L1 is from the FRET emitted by the pair (D,A1) which labels the heterodimer R1R2, and the signal L2 is from the pairs (D,A2) which label the receptor R2, the homodimer R2R2, and the heterodimer R1R2. Depending on the specificity of binding of the test compound, the signal L2 will therefore be maintained, suppressed or decreased.
This other embodiment therefore makes it possible advantageously to establish whether the test compound is specific to the heterodimer R1R2 or whether it also binds to the receptor R2 or to the homodimer R2R2, or whether it is specific to the receptor R2 and to the homodimer R2R2, assuming that these species are present in the measuring medium.
According to this other embodiment of the second aspect of the invention, step (a) also comprises labeling of the receptor R2 covalently or noncovalently with a second energy acceptor compound A2, A1 and A2 having different emission wavelengths and (D,A2) forming a FRET partner pair, and step (c) also comprises measurement of the luminescence L 2 emitted at the emission wavelength of the acceptor compound A2, in the presence and in the absence of the test compound. According to this other embodiment:
a decrease of the luminescence L2 and disappearance of the luminescence L1 in the presence of the test compound are representative of the binding of this compound to the heterodimer R1R2,
a decrease of the luminescence L2 and maintenance of the luminescence L1 in the presence of the test compound are representative of the binding of this compound to the receptor R2 and the homodimer R2R2 but not to the heterodimer R1R2, and
disappearance of the signals L1 and L2 in the presence of the test compound is representative of the binding of this compound simultaneously to the receptor R2, the homodimer R2R2 and the heterodimer R1 R2.
FRET Partner Pairs
According to the invention, the membrane receptors R1 and/or R2 as well as the ligand are labeled with a member of a FRET partner pair, namely, a fluorescent energy donor compound or a fluorescent energy acceptor compound. Advantageously, the labeling of the receptors R1 and R2 with the members of a FRET partner pair is direct labeling by covalent binding.
FRET is defined as a transfer of nonradiative energy resulting from a dipole-dipole interaction between an energy donor and an energy acceptor. This physical phenomenon requires energy compatibility between these molecules. This means that the emission spectrum of the donor must cover, at least partially, the absorption spectrum of the acceptor. In accordance with Förster's theory, FRET is a process that depends on the distance separating the two molecules, donor and acceptor: when these molecules are in close proximity to one another, a FRET signal will be emitted.
The fluorescent donor and acceptor compounds can be selected from the following group: allophycocyanins, in particular those known by the trade name XL665; luminescent organic molecules, such as rhodamines, cyanines (for example Cy5), squarains, coumarins, proflavins, acridines, fluoresceins, derivatives of boron-dipyrromethene (marketed under the designation “Bodipy”), fluorophores known by the name “Atto”, fluorophores known by the name “Dy”, compounds known by the name “Alexa”, nitrobenzoxadiazole, fluorescent metal complexes, such as rare earth cryptates, rare earth chelates (in particular the chelates and cryptates of europium, of terbium, of samarium, of dysprosium, of neodymium); luminescent inorganic particles such as nanocrystals (“quantum dots”). These fluorescent compounds can he used either as fluorescent donor compounds or as fluorescent acceptor compounds in a FRET system.
Advantageously, the fluorescent acceptor compounds are selected from the allophycocyanins, the rhodamines, the cyanines, the squarains, the coumarins, the proflavins, the acridines, the fluoresceins, the derivatives of boron-dipyrromethene, and nitrobenzoxadiazole.
The expressions “the cyanines” and “the rhodamines” must be understood respectively as “the derivatives of cyanine” and “the derivatives of rhodamine”. A person skilled in the art knows these various fluorophores, which are commercially available.
The compounds “Alexa” are marketed by the company Invitrogen; the compounds “Atto” are marketed by the company Attotec; the compounds “Dy” are marketed by the company Dyomics; the compounds “Cy” are marketed by the company Amersham Biosciences; the other compounds are marketed by various suppliers of chemical reagents, such as the companies Sigma, Aldrich or Acros.
The long-lived (>0.1 ms, preferably between 0.5 and 6 ms) fluorescent energy donor compounds, in particular the chelates or cryptates of rare earths are advantageous since they permit time resolved measurement, i.e. measurement of TR-FRET (Time Resolved FRET) signals while avoiding a high proportion of the background noise emitted by the measuring medium. For this reason, and generally, they are preferred for application of the method according to the invention. Advantageously, these compounds are complexes of lanthanides. These complexes (such as chelates or cryptates) are particularly suitable as energy donor member of the FRET pair.
The complexes of dysprosium (Dy3+), of samarium (Sm3+), of neodymium (Nd3+), of ytterbium (Yb3+) or of erbium (Er3+) are rare earth complexes that are also suitable for the purposes of the invention, but the complexes of europium (Eu3+) and of terbium (Tb3+) are particularly preferred.
Numerous rare earth complexes have been described and several are currently marketed by the companies PerkinElmer, Invitrogen and Cisbio Bioassay.
Examples of chelates or cryptates of rare earths suitable for the purposes of the invention are:
The cryptates of rare earths having one or more pyridine units. Rare earth cryptates of this kind are described for example in patents EP 0 180 492, EP 0 321 353, EP 0 601 113 and in international application WO 01/96 877. The cryptates of terbium (Tb3+) and of europium (Eu3+) are particularly suitable for the purposes of the present invention. Cryptates of rare earths are marketed by the company Cisbio Bioassay. We may mention, as nonlimiting examples, the cryptates of europium of the following formulas (which can be coupled to the compound to be labeled via a reactive group, here for example an NHS group):










The europium cryptate Py-BiPy-tetraacid-Eu is particularly suitable for application of the invention owing to its properties of resistance to extinction of fluorescence in biological media.
The chelates of rare earths described notably in patents U.S. Pat. No. 4,761,481, U.S. Pat. No. 5,032,677, U.S. Pat. No. 5,055,578, U.S. Pat. No. 5,106,957, U.S. Pat. No. 5,116,989, U.S. Pat. No. 4,761,481, U.S. Pat. No. 4,801,722, U.S. Pat. No. 4,794,191, U.S. Pat. No. 4,637,988, U.S. Pat. No. 4,670,572, U.S. Pat. No. 4,837,159, U.S. Pat. No. 4,859,777. The patents EP 0 403 593, U.S. Pat. No. 5,324,825, U.S. Pat. No. 5,202,423, U.S. Pat. No. 5,316,909 describe chelates composed of a nonadentate ligand such as terpyridine. These chelates of rare earths are marketed by the company PerkinElmer. Complexes of rare earths consisting of a chelating agent such as tetraazacyclododecane, substituted with a chromophore having aromatic rings, such as those described by Poole R. et al. in Biomol. Chem. 2005, 3, 1013-1024 “Synthesis and characterization of highly emissive and kinetically stable lanthanide complexes suitable for usage in cellulo”, can also be used. The complexes described in application WO2009/10580 can also be used. The terbium cryptate Tb(KR) of the following formula (which can be coupled to the compound to be labeled via a reactive group, here for example an NHS group):










and the synthesis of which is described in international application WO2008/063721 is one of the most suitable terbium cryptates for application of the invention.
The terbium cryptate Lumi4-Tb from the company Lumiphore, marketed by Cisbio Bioassay, The “quantum dye” from the company Research Organics, of the following formula (which can be coupled to the compound to be labeled via a reactive group, here NCS):












The terbium chelate DTPA-cs124 Tb, marketed by the company Invitrogen of the following formula (which can be coupled to the compound to be labeled via a reactive group R) and whose synthesis is described in American patent U.S. Pat. No. 5,622,821.













As for the acceptors, the derivatives of cyanine and of fluorescein are preferred.
Labeling of the Proteins R1 and/or R2
According to the invention, the membrane receptors R1 and/or R2 are labeled with a member of a FRET partner pair, namely a fluorescent energy donor compound or a fluorescent energy acceptor compound. Several techniques known by a person skilled in the art enable a membrane receptor to be coupled to fluorescent compounds:
(a) Coupling of the Membrane Receptor to a Donor or an Acceptor Noncovalently
The donor or acceptor can be coupled to the membrane receptor by means of a pair of binding partners, at least one of which is of protein nature. In this approach, the membrane receptor is fused with the binding partner of protein nature by the classical techniques of molecular biology (construction of an expression vector comprising a nucleotide sequence coding for the membrane receptor, fused with that coding for the protein binding partner, and introduction of the expression vector into the cell).
The donor or acceptor is conjugated covalently to the other binding partner, which is called coupling agent here, which will then be added to the extracellular medium. Recognition of the binding partners permits indirect labeling of the membrane receptor by the donor or the acceptor.
As nonlimiting examples of binding partners of this type, we may mention:
The pair consisting of the sequence cysteine-cysteine-X-X-cysteine-cysteine (SEQ ID No.1) in which X is any amino acid and of a bi-arsenic compound. These bi-arsenic compounds can easily be labeled with an organic molecule of the fluorescein or rhodamine type (see B. A. Griffin et al. (1998) Science, 1998, 281, 269-271 and S. A. Adams et al. (2002) J. Am. Chem. Soc. 2002, 124, 6063-6076 for details of the technology). The peptide BTX (bungarotoxin), composed of 13 amino acids, which is recognized by bungarotoxin (BTX), can be coupled to a fluorescent molecule (see C. M. McCann et al, (2005), Biotechnique (2005), 38, 945-952). The streptavidin (or avidin)/biotin pair: the binding sequence of streptavidin (SBP-Tag) is a sequence formed by 38 amino acids, which has a high affinity for biotin and can be labeled beforehand with a donor or an acceptor (see C. M. McCann et al. (2005), Biotechnique (2005), 38, 945-952). The sequence of the enzyme dihydrofolate reductase of E. coli (eDHER) which binds specifically and with a high affinity for ligands, such as trimethoprim, on which the donor or the acceptor can be grafted according to the technology called “Ligand link Universal labeling technology” from the company Active Motif. The tag/antitag pairs are binding partners often used for labeling proteins. The term “tag” denotes a small protein “label” consisting of an amino acid sequence, generally but not necessarily fairly short (less than 15 amino acids), which is fused to the membrane receptor or else is naturally present in this protein. The term “antitag” denotes an antibody that binds specifically to said “tag”. In this application, the “antitag” antibody is bound covalently to the donor or to the acceptor. When the antibody labeled in this way is added to the extracellular medium, it binds to the “tag” conjugated to the membrane receptor and the “tag/antitag” interaction permits indirect labeling of this protein by the donor or the acceptor. As nonlimiting examples of “tag/antitag” pairs, we may mention the following pairs, the members of which are available commercially: GST/anti-GST antibody in which GST represents glutathione S-transferase or a fragment thereof; 6HIS/anti-6HIS antibody in which 6HIS is a peptide consisting of 6 histidines; Myc/anti-Myc antibody in which Myc is a peptide consisting of the amino acids 410-419 of the human Myc protein; FLAG/anti-FLAG antibody in which FLAG is a peptide having the 8 amino acids DYKDDDDK (SEQ ID No.2); HA/anti-HA antibody in which HA is an epitope of the Influenza virus hemagglutinin, consisting of the 9 amino acids YPYDVPFYA (SEQ ID No.3). It is clear that the precise nature of the tag is not critical for application of the invention.

(b) Coupling of the Membrane Receptor to a Donor or an Acceptor Covalently
In this approach, the donor or the acceptor is coupled to the membrane receptor by a covalent bond; several techniques have been described and the reagents necessary for applying them are available commercially. For this coupling, one of the following techniques can be used:
formation of a covalent bond on a reactive group present on the membrane receptor, in particular on one of the following groups: terminal amino group, carboxylate groups of aspartic and glutamic acids, amine groups of lysines, guanidine groups of arginines, thiol groups of cysteines, phenol groups of tyrosines, indole rings of tryptophans, thioether groups of methionines, imidazole groups of histidines. These groups present on the membrane receptor can form a covalent bond with a reactive group carried by the donor or the acceptor. The appropriate reactive groups are known by a person skilled in the art: a donor or the acceptor functionalized with a maleimide group will for example be capable of binding covalently with the thiol groups carried by the cysteines of the protein. Moreover, a donor/acceptor bearing an ester of N-hydroxysuccinimide will be capable of attaching covalently to an amine of the membrane receptor. Use of a suicide enzyme Suicide enzyme means proteins that have a n enzymatic activity modified by specific mutations which confer on them the capacity of binding a substrate rapidly and covalently. These enzymes are called “suicide” as each one can only bind a single fluorescent molecule, the activity of the enzyme being blocked by attachment of the substrate. These enzymes consequently constitute a tool of choice for specifically labeling receptors of interest with a ratio of one fluorescent molecule for one protein. In this approach, a suicide enzyme is fused, by the classical techniques of molecular biology, with the membrane receptor—preferably in its N-terminal portion—and the substrate of the enzyme bound covalently to a donor/acceptor is introduced into the extracellular medium. The enzymatic reaction leads to covalent binding of the substrate labeled with the enzyme, and therefore labeling of the membrane receptor by the donor or the acceptor. We may mention, as nonlimiting examples, the following enzymes:
the mutants of O6-alkylguanine DNA alkyltransferase (AGT). The enzymes SNAP-tag (Juillerat et al., Chemistry & biology, Vol. 10, 313-317 April 2003) and CLIP-tag (Gautier et al., Chemistry and Biology, 15, 128-136, February 2008) marketed by the company NEB are mutants of human AGT, of which the substrates are, respectively, O 6 -benzylguanine (abbreviated to BG hereinafter) and O 2 -benzylcytosine (abbreviated to BC hereinafter). The enzyme N-AGT (Gronemeyer et al. (Protein engineering, design & selection, vol. 19, no 7, pp 309-3016, 2006)) is another mutant of this enzyme, whose reactivity with O 6 -benzylguanine is better than that of the enzyme SNAP-tag. the mutants of a dehalogenase (such as the enzyme HaloTag marketed by Promega) which also generates an enzymatic reaction of the suicide type (see WO2004/072232), certain substrates of which are compounds of the chloroalkane family, in particular the chloroalkanes having the unit —NH—CH 2 CH 2 —O—CH 2 CH 2 —O—(CH 2 ) 6 —Cl. In this case, the donor/acceptor will be conjugated to this type of unit. The protein ACP (“Acyl Carrier Protein”), on which the 4′-phosphopantetheine residue of coenzyme A is transferred, in the presence of phosphopantetheine transferase, onto a serine of the ACP (N. George et al., Journal of the American Chemical Society 126 (2004) p. 8896-8897). When this approach is used for labeling the membrane receptor with the donor or the acceptor, it is necessary to add phosphopantetheine transferase to the reaction mixture. The company NEB markets a fragment of ACP under the trade name “ACP-Tag” for labeling proteins.


When this approach is used for labeling the receptor of interest, the cells are transfected with an expression plasmid bearing the DNA coding for a fusion protein comprising the suicide enzyme and the receptor of interest. This plasmid can also comprise, upstream of the DNA coding for these proteins, the DNA coding for a label such as for example the epitope FLAG, the epitope myc, or that of the influenza virus hemagglutinin (HA). These labels are not essential but they facilitate manipulation of the fusion protein for purposes of checking or purification. Transfection is carried out by conventional techniques, such as electropartition.
To ensure that the fusion protein will be expressed in the cell membrane, it may be useful to include in the expression plasmid, upstream of the sequence coding for the receptor of interest and of the suicide enzyme, that coding for a membrane-addressing peptide, such as the signal peptide T8 or the signal peptide of the receptor mGluR5, use of which for this purpose is known by a person skilled in the art. Finally, it may also be desirable to ensure that the sequence coding for the receptor of interest does not bear a native membrane-addressing sequence, which could become the object of post-translational cleavage of the bond between the receptor of interest and the suicide enzyme: if this is the case, it is preferable not to introduce this domain into the expression plasmid.
When working on intact cells, so that the enzymatic reaction takes place with the substrate of the enzyme present in the extracellular medium (such as a BG-FRET partner conjugate), it is necessary for the suicide enzyme to be exposed to the extracellular medium: when the natural N-terminal portion of the receptor of interest is exposed to the extracellular medium, which is the case for GPCRs and RTKs, the fusion protein will be constructed in such a way that the suicide enzyme is expressed in the N-terminal portion of the fusion protein, but always downstream of the membrane-addressing peptide if it is present.
Finally, when a suicide enzyme is used for labeling the receptor of interest with the FRET partner, and the receptor of interest is a GPCR or RTK, the invention comprises a preliminary step of transfection of the cells by an expression vector comprising the DNA sequence coding for a fusion protein whose N-terminal portion comprises a suicide enzyme and C-terminal portion comprises the receptor of interest (R1 or R2).
The introduction of the substrate of the enzyme conjugated to a FRET partner in the extracellular medium will lead to labeling of the receptor of interest with this FRET partner.
Advantageously, each of the receptors R1 and R2 is expressed in the form of fusion protein with a suicide enzyme, labeling of them being effected by addition of the members of the FRET partner pairs to the measuring medium, each of which is bound covalently to the substrate of said suicide enzyme. In this case the suicide enzymes used for each receptor can be different or identical.
In this embodiment, the expression vectors coding for a fusion protein selected from the following fusion proteins can be used:
suicide enzyme—receptor of interest, or label—suicide enzyme—receptor of interest, or membrane-addressing peptide—suicide enzyme—receptor of interest, or membrane-addressing peptide—label—suicide enzyme—receptor of interest.

As an illustration of the use of this approach, we may mention the works of Maurel et al., who described the preparation of plasmids coding for a fusion protein comprising a suicide enzyme (Snaptag) in the N-terminal portion of the membrane receptor (GABAB B1, GABAB B2, mGlu1) and their transfection in cells (Nature Methods, 2008, Supplementary methods).
Labeled Ligand
The method according to the invention requires the use of ligands of the membrane receptors under investigation, labeled with a member of a FRET partner pair, i.e. an energy donor compound or an energy acceptor compound. Here, the term ligand denotes an organic, optionally protein, molecule, capable of binding to the receptor and modulating its activity. The ligand is preferably different from an antibody, and even more preferably is an agonist (including a partial agonist or an inverse agonist) or an antagonist of the membrane receptors under investigation. It is also possible to use a ligand that is an allosteric modulator of these receptors.
Numerous ligands of GPCR have notably been described: a database has been made available to the public and supplies information on the GPCRs and their ligands (Okuno, Y. et al., 2008. GLIDA: GPCR ligand database for chemical genomics drug discovery database and tools update. Nucl. Acids Res., 36(suppl — 1), D907-912). A person skilled in the art therefore has access to a very large number of compounds that bind to GPCRs and can be used in the method according to the invention.
A ligand is labeled with a fluorescent donor or acceptor compound by the classical techniques of conjugation making use of reactive groups. The fluorescent donor or acceptor compounds are generally marketed in “functionalized” form, i.e. they bear a reactive group capable of reacting with a functional group present on the compound to be labeled, in this case the ligand.
Typically, the reactive group present on the fluorescent donor or acceptor compound is an electrophilic or nucleophilic group that can form a covalent bond when it is put in the presence of a suitable nucleophilic or electrophilic group, respectively. As examples, the pairs of electrophilic/nucleophilic groups and the type of covalent bond formed when they are brought together are listed below:









Electrophilic group
Nucleophilic group
Type of bond



acrylamides
thiols
thioethers

acyl halides
amines/anilines
carboxamides

aldehydes
amines/anilines
imines

aldehydes or ketones
hydrazines
hydrazones

aldehydes or ketones
hydroxylamines
oximes

alkyl sulfonates
thiols
thioethers

anhydrides
amines/anilines
carboxamides

aryl halide
thiols
thiophenols

aryl halide
amines
aryl amines

aziridines
thiols
thioethers

carbodiimides
carboxylic acids
N-acylureas or anhydrides

activated esters*
amines/anilines
carboxamides

haloacetamides
thiols
thioethers

halotriazines
amines/anilines
aminotriazines

imido esters
amines/anilines
amidines

isocyanates
amines/anilines
ureas

isothiocyanates
amines/anilines
thioureas

maleimides
thiols
thioethers

sulfonate esters
amines/anilines
alkyl amines

sulfonyl halides
amines/anilines
sulfonamides



*“activated ester” means groups of formula COY, where Y is: a leaving group, selected from the succinimidyloxy (—OC 4 H 4 NO 2 ), sulfosuccinimidyloxy (—OC 4 H 3 NO 2 —SO 3 H) groups; an aryloxy group, unsubstituted, or substituted with at least one electrophilic substituent such as the nitro, fluoro, chloro, cyano, trifluoromethyl groups, thus forming an activated aryl ester; a carboxylic acid activated by a carbodiimide group, forming an anhydride —OCORa or —OCNRaNHRb, in which Ra and Rb are identical or different and are selected from the C1-C6 alkyl, C1-C6 perfluoroalkyl, C1-C6 alkoxy, cyclohexyl groups; 3-dimethylaminopropyl, or N-morpholinoethyl.


































The commercially available fluorescent donor and acceptor compounds generally bear a maleimide function or an activated ester, most often activated by an NHS (N-hydroxysuccinimidyl) group, which react with the thiol and amine groups respectively; it is therefore particularly advantageous to use ligands containing an amine or thiol function.
When the ligand is of protein nature, it may be advantageous to use one of the functional groups naturally present in proteins: the amino terminal group, carboxylate terminal group, carboxy late groups of aspartic and glutamic acids, amine groups of lysines, guanidine groups of arginines, thiol groups of cysteines, phenol groups of tyrosines, indole rings of tryptophans, thioether groups of methionines, imidazole groups of histidines.
If the ligand does not bear a functional group in the natural state, such groups can be introduced. Methods of introducing functional groups are notably described in C. Kessler, Nonisotopic probing, slotting and Sequencing, 2nd edition, L. J. Kricka (1995), Publ, Academic Press Ltd., London, p. 66-72.
Another approach for labeling a ligand with a fluorescent compound consists of introducing a reactive group into the ligand, for example an NHS group or a maleimide group, and of putting it in the presence of a fluorophore bearing a functional group that will react with the reactive group to form a covalent bond.
It is important to verify that the labeled ligand retains sufficient affinity for its receptor; this can be checked simply by conventional binding experiments, which allow the affinity constant of the labeled ligand for the receptor to be calculated.
Several authors have described the labeling of known ligands of GPCR with fluorescent compounds and it is within the capability of a person skilled in the art to select the appropriate ligands according to the GPCRs being investigated. We may mention in particular the following works:
Middleton, R. J. & Kellam, B., have published a review article describing numerous fluorescent ligands (2005, Fluorophore-tagged GPCR ligands. Current Opinion in Chemical Biology, 9(5), 517-525). Beaudet, A. et al. have presented the essential principles for the preparation of fluorescent ligands (1998. Fluorescent ligands for studying neuropeptide receptors by confocal microscopy. Brazilian journal of Medical and Biological Research, 31(11), 1479-1489). Thierry Durroux et al. (“Fluorescent Pseudo-Peptide Linear Vasopressin Antagonists: Design, Synthesis, and Applications” Journal of Medicinal Chemistry 42, No, 7 Apr. 1, 1999: 1312-1319) described ligands of the receptor V1a, labeled with fluorescein. International patent application WO00/12544 describes a method for labeling various chemokines, which are the ligands of the chemokine receptors. International patent application WO2004/088312 describes the synthesis of agonists and of antagonists of β2-adrenergic receptors, labeled with a derivative of boron-dipyrromethene (“Bodipy”), L Hein et al. (“Intracellular trafficking of angiotensin II and its AT1 and AT2 receptors: evidence for selective sorting of receptor and ligand,” Molecular Endocrinology (Baltimore, Md.) 11, No. 9 (August 1997): 1266-1277) synthesized an angiotensin-fluorescein conjugate. U.S. Pat. No. 4,767,718 describes the synthesis of fluorescent ligands of the opioid receptors, in particular antagonists of these receptors derived from naloxone and naltrexone. Heather L Handl et al. (“Lanthanide-based time-resolved fluorescence of in cyto ligand-receptor interactions,” Analytical Biochemistry 330, No, 2 (Jul. 15, 2004): 242-250) present the manufacture of an analog of α-MSH, which is a ligand of the melacortin receptors, labeled with a europium chelate. Bakthavachalam, V et al. described the labeling of ligands of the dopaminergic receptors D1 and D2 with fluorescein or with NBD, in particular NAPS (derivative of spiperone, D2 antagonist), PPHT (D1 agonist), SKF83566 (D1 antagonist), and SKF38393 (D1 agonist) (1991. Fluorescent probes for dopamine receptors: synthesis and characterization of fluorescein and 7-nitrobenz-2-oxa-1,3-diazol-4-yl conjugates of D-1 and D-2 receptor ligands. Journal of Medicinal Chemistry, 34(11), 3235-3241).

As nonlimiting examples of ligands usable in the methods according to the invention, we may add the following ligands:
EDA9 (antagonist of the V2 receptor, synthesis of which is described by Manning, M. et al., 1992. Potent V2/V1a vasopressin antagonists with C-terminal ethylenediamine-linked retro-amino acids. Journal of Medicinal Chemistry, 35(21), 3895-3904), NAPS (antagonist of the D2 receptor), RS544 (antagonist of the V1a receptor), SDF1 (agonist of CXCR4 and CXCR7), Propranolol (antagonist of the beta2-adrenergic receptors), VIP (agonist of VPAC1 and of VPAC2), NDPalphaMSH (agonist of the MC3 and MC4 receptors), MIP1alpha (inflammatory protein of macrophages=CCL3, agonist of CCR1 and CCR5), RANTES (=CCL5, agonist of CCR5), MDC (=CCL22, agonist of CCR4), Angiotensin II (agonist of the receptor of AT1), Substance P (agonist of the NK1 receptor), Neurokinin A (agonist of the NK2 receptor).
Moreover, some fluorescent ligands are commercially available: this applies for example to naloxone-fluorescein (opioid antagonist), which is marketed by Molecular Probe. Cisbio bioassays also markets a wide range of fluorescent ligands of membrane receptors suitable for application of the invention, in particular fluorescent derivatives of prazosin (antagonist of the alpha adrenergic receptor), propranolol (antagonist of the beta 2 adrenergic receptor), angiotensin II (agonist of the AT1 and AT2 receptor), HOE140 (antagonist of the bradykinin B2 receptor), SDF1alpha (agonist of CXCR4), cholecystokinin (agonist of the receptor CCK1, CCK2), spiperone and NAPS (antagonists of the dopaminergic D2 receptor), CGP 54626 (antagonist of the GA BAB receptor), ghrelin (antagonist of the GHSR1A receptor), GIP (“Gastric inhibitory polypeptide”, agonist of the GIPR receptor), mepyramine (inverse agonist of the histamine receptor H1), MSH (“melanocyte stimulating hormone”, agonist of the melanocortin receptors MC3, MC4, MC5), naltrexone (antagonist of the mu, delta and kappa opioid receptors), substance P (agonist of the neurokinin receptors NK1), neurokinin A (agonist of the neurokinin receptor NK2), a specific agonist of VPAC1 that does not bind to VPAC2, arginine-vasopressin (antagonist of the receptors V1a and V2).
These ligands can be used when R1 and/or R2 are one of the membrane receptors to which these ligands bind.
Thus, EDA9 conjugated to a fluorescent compound is useful for applying the invention with the heterodimers V1a-V2, V2-OT, D2-V2 or the V2-V2 homodimer.
NAPS or spiperone conjugated to a fluorescent compound is useful for applying the invention with the heterodimers D2-A1, D2-A2A, D2-SSTR5, D2-D3, D2-SSTR1B, D2-CCR4, D2-CCR3, D2-CCR1, D2-NK1, D2-NK2, D2-AT1, D2-MC3, D2-MC4, D2-Mu Opioid, D2-GHSR1a, D2-ETA, D2-ETB, D2-CCK1, D2-CCK2, D2-VPAC1, D2-VPAC2, D2-β2AR, D2-CXCR4, D2-CXCR7, D2-V2 and the D2-D2 homodimers.
RS544 conjugated to a fluorescent compound is useful for applying the invention with the heterodimers V1a-V2, V1a-OT, and the V1a-V1a homodimers.
Naltrexazone conjugated to a fluorescent compound is useful for applying the invention with the heterodimers μ-opioid-SSTR1A, κ-opioid-δ-opioid, μ-opioid-δ-opioid, δ-opioid-α2aAR, δ-opioid-SSTR2A, δ-opioid-NK1-P, δ-opioid-β2AR, μ-opioid-D2 and the homodimers μ-opioid-μ-opioid and δ-opioid-δ-opioid.
Substance P conjugated to a fluorescent compound is useful for applying the invention with the heterodimers NK1-δ-opioid, NK1-D2.
Angiotensin II conjugated to a fluorescent compound is useful for applying the invention with the heterodimers AT2-β2AR, AT2-B2, AT2-AT1, AT1-D2.
RANTES conjugated to a fluorescent compound is useful for applying the invention with the heterodimers CCR5-CCR2 and the homodimers of CCR5.
Propranolol conjugated to a fluorescent compound is useful for applying invention with the heterodimers β2AR-AT2, β2AR-δ-opioid, β2AR-κ-opioid, β2AR-Y1, β2AR-H2, β2AR-M3, β2AR-5HT2B, β2AR-5HT2C, β2AR-H3, β2AR-EP1, β2AR-β3AR, β2ARα2aAR, β2AR-M71, β2AR-D2 and the β2AR-β2AR homodimers.
SDF1 conjugated to a fluorescent compound is useful for applying the invention with the heterodimers CXCR4-CCR2, CXCR4-CCRA32, CXCR4-CXCR2B, CXCR4-D2 and the CXCR4CXCR4 homodimers.
Membrane Protein: Monomers, Dimers, Homodimers and Heterodimers
The invention can be applied with various membrane receptors but, preferably, the membrane receptors R1 and R2 are GPCRs.
The membrane receptors are expressed in the cell membranes naturally, or else they are expressed using the classical techniques of molecular biology, in particular expression vectors introduced into the cells stably or transiently. The reagents intended for introduction of heterologous DNA into cells, stably or transiently, are commercially available and the DNA sequences coding for the receptors of interest, in particular those coding for the GPCRs, are available in databases such as Genbank. When the receptors of interest are expressed by the cells stably, phenomena of cytotoxicity may be observed owing to the presence of an excessive number of GPCRs; in these cases, it may be advantageous to use an inducible expression system to limit expression of the GPCRs.
Thus, the method according to the invention can comprise a preliminary step of transfection of cells with an expression vector coding for the membrane receptor R1 and/or R2. As described below, this vector/these vectors can also contain the sequences coding for suicide enzymes permitting the covalent labeling of the membrane receptors with a FRET partner. In particular, transfection of the cells is effected by means of an expression vector comprising the DNA sequence coding for the receptor R1 on the one hand, and by an expression vector comprising the DNA sequence coding for the receptor R2 on the other hand,
Preferably the receptors R1 and R2 are each expressed by an expression vector introduced into the cell stably or transiently.
The invention is particularly suitable for investigating the pharmacology of the GPCRs. A list of the known GPCRs has been published and the DNA sequences coding for these receptors are also accessible (Harmar A J et al, (2009) IUPHAR-DB: the IUPHAR database of G protein-coupled receptors and ion channels, Nucl. Acids Res. 37 (Database issue): D580-D585). This list, summarized in Table 1, also gives the known natural ligands of these receptors.





TABLE 1



GPCRs







IUPHAR

Family
Natural ligand
official name



Receptors of 5-
5-hydroxytryptamine
5-HT1A

hydroxytryptamine
5-hydroxytryptamine
5-HT1B


5-hydroxytryptamine
5-HT1D


5-hydroxytryptamine
5-ht1e


5-hydroxytryptamine
5-HT1F


5-hydroxytryptamine
5-HT2A


5-hydroxytryptamine
5-HT2B


5-hydroxytryptamine
5-HT2C


5-hydroxytryptamine
5-HT4


5-hydroxytryptamine
5-ht5a


5-hydroxytryptamine
5-HT6


5-hydroxytryptamine
5-HT7

Acetylcholine
acetylcholine
M1

(muscarinic)
acetylcholine
M2

receptors
acetylcholine
M3


acetylcholine
M4


acetylcholine
M5

Adenosine receptors
adenosine
A1


adenosine
A2A


adenosine
A2B


adenosine
A3

Adrenergic receptors
noradrenaline
α1A-adrenoceptor


adrenaline
α1B-adrenoceptor


adrenaline
α1D-adrenoceptor


adrenaline
α2A-adrenoceptor


adrenaline
α2B-adrenoceptor


adrenaline
α2C-adrenoceptor


noradrenaline
β1-adrenoceptor


adrenaline
β2-adrenoceptor


adrenaline
β3-adrenoceptor

Anaphylatoxin
anaphylatoxin C5a, C5a
C5L2

receptors
of Arg74


anaphylatoxin C5a
C5a


anaphylatoxin C3a
C3a

Angiotensin
angiotensin
AT1

receptors
angiotensin
AT2

Apelin receptors
apelin
APJ

Bile acid receptors
bile acids
GPBA

Bombesin receptors
neuromedin B
BB1


gastrin-releasing peptide
BB2



BB3

Bradykinin receptors
bradykinin
B1


bradykinin
B2

Cannabinoid
cannabinoids
CB1

receptors
cannabinoids
CB2

Chemokine
CXCL8
CXCR1

receptors
CXCL1-3, CXCL5-8,
CXCR2


macrophage derived


lectin


CXCL9-11
CXCR3


CXCL12
CXCR4


CXCL13
CXCR5


CCL3, CCL5, CCL7,
CCR1


CCL8, CCL13-16,


CCL23


CCL2, CCL7, CCL8,
CCR2


CCL13


CCL11 (eotaxin); CCL5,
CCR3


CCL7, CCL8, CCL13,


CCL15, CCL24, CCL26


CCL17, CCL22
CCR4


CCL3, CCL4, CCL5,
CCR5


CCL8, CCL14


CCL20
CCR6


CCL19, CCL21
CCR7


CCL1, CCL4, CCL17
CCR8


CCL25
CCR9


CCL26-28
CCR10


CX3CL1
CX3CR1


XCL1, XCL2
XCR1


CXCL16
CXCR6

Cholecystokinin
cholecystokinin
CCK1

receptors
cholecystokinin, gastrin
CCK2

Dopamine receptors
dopamine
D1


dopamine
D2


dopamine
D3


dopamine
D4


dopamine
D5

Endothelin receptors
endothelin 1, endothelin 2
ETA


endothelins 1, 2 and 3
ETB

Estrogen receptors

GPER

(coupled to G

proteins)

Formylpeptide

FPR2/ALX

receptors

FPR3



FPR1

Receptors of free
Long-chain carboxylic
FFA1

fatty acids
acids



FFA3



FFA2



GPR42

Galanin receptors
galanin
GAL1


galanin
GAL2


galanin
GAL3

Ghrelin receptors
ghrelin
ghrelin

Receptors of
follicle-stimulating
FSH

glycoprotein
hormone

hormones
luteinizing hormone,
LH


chorionic gonadotropin


thyroid-stimulating
TSH


hormone

Gonadoliberin
gonadoliberin
GnRH

receptors
gonadoliberin
GnRH2

Histamine receptors
histamine
H1


histamine
H2


histamine
H3


histamine
H4

KiSS1-derived

KiSS1

peptide receptors

Leukotriene
leukotriene B4
BLT2

receptors

FPR2/ALX


5-oxo-ETE
OXE


leukotriene B4
BLT1


leukotriene D4
CysLT1


leukotriene C4
CysLT2

Lysophospholipid
lysophosphatidic acid
LPA1

receptors
lysophosphatidic acid
LPA2


lysophosphatidic acid
LPA3


sphingosine 1-
S1P1


phosphate


sphingosine 1-
S1P2


phosphate


sphingosine 1-
S1P3


phosphate


sphingosine 1-
S1P4


phosphate


sphingosine 1-
S1P5


phosphate

Receptors of

MCH1

melanin

MCH2

concentrating

hormone

Melanocortin
melanocyte stimulating
MC1

receptors
hormone


adrenocorticotropic
MC2


hormone


γ-melanocyte stimulating
MC3


hormone


β-melanocyte
MC4


stimulating hormone


α-melanocyte
MC5


stimulating hormone

Melatonin receptors
melatonin
MT1


melatonin
MT2

Motilin receptor
motilin
motilin

Neuromedin U
neuromedin U
NMU1

receptors
neuromedin U
NMU2

Receptors of

NPFF1

neuropeptide

NPFF2

FF/neuropeptide AF

Neuropeptide S

NPS

receptor

Receptors of

NPBW1

neuropeptide

NPBW2

W/neuropeptide B

Neuropeptide Y
neuropeptide Y
Y1

receptors
neuropeptide Y
Y2


pancreatic polypeptide
Y4


neuropeptide Y
Y5

Neurotensin
neurotensin
NTS1

receptors
neurotensin
NTS2

Nicotinic acid
nicotinic acid (low
GPR109B

receptors
affinity)
(temporary name)


nicotinic acid (high
GPR109A


affinity)
(temporary name)


lactate
GPR81



(temporary name)

Non-signalling 7TM

FY

chemokine-binding

CCPB2

proteins

CCRL1

Opioid receptors
β-endorphin
μ


β-endorphin
δ


dynorphin A
K


nociceptin/orphanin FQ
NOP

Orexin receptors
orexin A, orexin B
OX1


orexin A, orexin B
OX2

P2Y receptors
ADP
P2Y1


UTP, ATP
P2Y2


UTP
P2Y4


UDP
P2Y6


ATP
P2Y11


ADP
P2Y12


UDP-glucose
P2Y14


ADP
P2Y13

Receptor of peptide
RF-amide P518 gene
QRFP

P518
product

Platelet-activating
platelet-activating factor
PAF

factor receptor

Prokineticin

PKR1

receptors

PKR2

Prolactoliberin

PRRP

receptors

Prostanoid receptors
prostaglandin D2
DP1


prostaglandin E2
EP1


prostaglandin E2
EP2


prostaglandin E2
EP3


prostaglandin E2
EP4


prostaglandin F2a
FP


prostacyclin
IP1


thromboxane A2
TP


11-dehydro-
DP2


thromboxane B2

Protease-activated
thrombin
PAR1

receptors
serine protease
PAR2


thrombin
PAR3


serine protease
PAR4

Receptors of

RXFP1

peptides of the

RXFP2

relaxin family

RXFP3



RXFP4

Somatostatin
somatostatin
sst2

receptors
somatostatin
sst5


somatostatin
sst3


somatostatin
sst1


somatostatin
sst4

Receptors of
substance P
NK1

tachykinin
neurokinin A
NK2


neurokinin B
NK3

Thyroliberin receptor
thyrotropin-releasing
TRH1


hormone

Receptor of trace

TA1

amines

Urotensin receptor
urotensin II
UT

Receptors of
vasopressin
V1A

vasopressin and of
vasopressin
V2

oxytocin
vasopressin
V1B


oxytocin
OT

Olfactory receptors

Calcitonin receptors
amylin, CGRP
CT



AMY1



AMY2



AMY3


adrenomedullin, CGRP
CALCRL



CGRP



AM1



AM2

Corticoliberin

CRF1

receptors

CRF2

Glucagon receptors
glucagon
glucagon



GLP-1



GLP-2



GIP


secretin
secretin



GHRH

Parathyroid
parathyroid hormone
PTH1

hormone receptors
TIP-39
PTH2

Receptors of VIP
PACAP
PAC1

and of PACAP
VIP, PACAP
VPAC1


VIP, PACAP
VPAC2

Calcium-sensing
calcium
CaS

receptors

GPRC6

GABAB receptors
GABAB
GABAB1



GABAB2



GABAB

GPRC5 receptors

RAIG1



RAIG2



RAIG3



RAIG4

Metabotropic
glutamate
mGlu1

glutamate receptors
glutamate
mGlu2


glutamate
mGlu3


glutamate
mGlu4


glutamate
mGlu5


glutamate
mGlu6


glutamate
mGlu7


glutamate
mGlu8

Taste receptors

T1R1



T1R2



T1R3

“Frizzled”
Wnt3A, Wnt3, Wnt1,
FZD1

receptors
Wnt2


Wnt
FZD2


Wnt
FZD3


Wnt
FZD4


Wnt
FZD5


Wnt
FZD6


Wnt
FZD7


Wnt
FZD8


Wnt
FZD9


Wnt
FZD10


constitutive
SMO














































































































































































































































































































Table 2 gives examples of GPCR heterodimers consisting of a first receptor R1 and a second receptor R2. These heterodimers can be used in the methods according to the invention.






TABLE 2



R1 is a GPCR
R2 is a GPCR








class
type
class
type











MgluR2
C
metabo Glu
MgluR3
C
metabo Glu

MgluR2
C
metabo Glu
MgluR4
C
metabo Glu

MgluR2
C
metabo Glu
MgluR8
C
metabo Glu

MgluR3
C
metabo Glu
MgluR4
C
metabo Glu

MgluR3
C
metabo Glu
MgluR8
C
metabo Glu

MgluR4
C
metabo Glu
MgluR8
C
metabo Glu

MgluR1
C
metabo Glu
CaS
C
calcium sensing

MgluR1
C
metabo Glu
A1
A
adenosine

MgluR2
C
metabo Glu
5-HT2A
A
serotonin

MgluR5
C
metabo Glu
A2A
A
adenosine

GABAB1
C
GABAB
GABAB2
C
GABAB

5-HT1B
A
serotonin
5-HT1D
A
serotonin

A1
A
adenosine
D1
A
dopamine

A1
A
adenosine
D2
A
dopamine

A1
A
adenosine
P2Y1
A
purinergic

A2A
A
adenosine
D2
A
dopamine

A2A
A
adenosine
D3
A
dopamine

AT1
A
angiotensin
AT2
A
angiotensin

AT1
A
angiotensin
B2
A
bradykinin

AT2
A
angiotensin
β2AR
A
B2-adrenoceptor

AT2
A
angiotensin
B2
A
bradykinin

M2
A
muscaranic
M3
A
muscaranic Achl



Achl

MT1
A
melatonin
MT2
A
melatonin

SSTR2A
A
somatostatin
SSTR1B
A
somatostatin

D2
A
dopamine
SSTR5
A
somatostatin

D2
A
dopamine
D3
A
dopamine

D1
A
dopamine
D2
A
dopamine

CCR2
A
chemokine
CCR5
A
chemokine

SSTR1A
A
somatostatin
μ-opioid
A
opioid

SSTR1A
A
somatostatin
SSTR1C
A
somatostatin

SSTR1
A
somatostatin
SSTR5
A
somatostatin

SSTR1B
A
somatostatin
D2
A
dopamine

SSTR2
A
somatostatin
SSTR3
A
somatostatin

T1R1
C
taste
T1R3
C
taste

T1R2
C
taste
T1R3
C
taste

δ-opioid
A
opioid
K-opioid
A
opioid

μ-opioid
A
opioid
δ-opioid
A
opioid

δ-opioid
A
opioid
α2aAR
A
A2-adrenoceptor

δ-opioid
A
opioid
SSTR2A
A
somatostatin

δ-opioid
A
opioid
NK1-P
A
tachykinin

δ-opioid
A
opioid
β2AR
A
B2-adrenoceptor

δ-opioid
A
opioid
SNSR4
A

K-opioid
A
opioid
β2AR
A
B2-adrenoceptor

Orexin1
A
orexin
CB1
A
cannabinoid

MT1
A
melatonin
GPR50
?
Orph

MrgE
?
Orph
MrgD
?
Orph

ETA
A
endothelin
ETB
A
endothelin

V1a
A
vasopressin
V2
A
vasopressin

V1a
A
vasopressin
OT
A
oxytocin

V2
A
vasopressin
OT
A
oxytocin

α1aAR
A
A1-
α1bAR
A
A1-adrenoceptor



adrenoceptor

α1bAR
A
A1-
H1
A
histamine



adrenoceptor

α1dAR
A
A1-
α1bAR
A
A1-adrenoceptor



adrenoceptor

β1AR
A
B1-
α2aAR
A
A2-adrenoceptor



adrenoceptor

β1AR
A
B1-
β2AR
A
B2-adrenoceptor



adrenoceptor

β2AR
A
B2-
M71
A
olfactory receptor



adrenoceptor

β2AR
A
B2-
α2aAR
A
A2-adrenoceptor



adrenoceptor

β2AR
A
B2-
B3AR
A
B3-adrenoceptor



adrenoceptor

β2AR
A
B2-
EP1
A



adrenoceptor

β2AR
A
B2-
H3
A
histamine



adrenoceptor

β2AR
A
B2-
5HT2C
A
serotonin



adrenoceptor

β2AR
A
B2-
5HT2B
A
serotonin



adrenoceptor

β2AR
A
B2-
M3
A
muscaranic Achl



adrenoceptor

β2AR
A
B2-
H2
A
histamine



adrenoceptor

β2AR
A
B2-
Y1
A
neuropeptide Y



adrenoceptor

5HT2C
A
serotonin
β3AR
A
B3-adrenoceptor

5HT2C
A
serotonin
Y5
A
neuropeptide Y

5HT2C
A
serotonin
M1
A
muscaranic Achl

CXCR1
A
chemokine
CXCR2
A
chemokine

CXCR4
A
chemokine
CXCR2B
A
chemokine

CXCR4
A
chemokine
CCRΔ32
A
chemokine

CXCR4
A
chemokine
CCR2
A
chemokine

CCR2
A
chemokine
CCR5
A
chemokine

D2
A
dopamine
CCR1
A
chemokine

D2
A
dopamine
CCR3
A
chemokine

D2
A
dopamine
CCR4
A
chemokine

D2
A
dopamine
NK1
A
tachykinin

D2
A
dopamine
NK2
A
tachykinin

D2
A
dopamine
AT1
A
angiotensin

D2
A
dopamine
MC3
A
melanocortin

D2
A
dopamine
MC4
A
melanocortin

D2
A
dopamine
μ-opioid
A
opioid

D2
A
dopamine
GHSR1a
A
ghrelin

D2
A
dopamine
ETA
A
endothelin

D2
A
dopamine
ETB
A
endothelin

D2
A
dopamine
CCK1
A
cholecystokinin

D2
A
dopamine
CCK2
A
cholecystokinin

D2
A
dopamine
VPAC1
B
VIP, PACAP

D2
A
dopamine
VPAC2
B
VIP, PACAP

D2
A
dopamine
β2AR
A
B2-adrenoceptor

D2
A
dopamine
CXCR4
A
chemokine

D2
A
dopamine
CXCR7
A
chemokine

D2
A
dopamine
V2
A
vasopressin




































































































































The GPCRs in Table 3 can form homodimers.









TABLE 3





GPCR
class
type





CaSR
C
calciumSensing


MgluR1
C
metabo Glu


MgluR2
C
metabo Glu


MgluR3
C
metabo Glu


MgluR4
C
metabo Glu


MgluR5
C
metabo Glu


MgluR6
C
metabo Glu


MgluR7
C
metabo Glu


MgluR8
C
metabo Giu


5-HT2C
A
serotonin


5-HT1B
A
serotonin


5-HT1C
A
serotonin


β1AR
A
B1-adrenoceptor


β2AR
A
B2-adrenoceptor


V1a
A
vasopressin


V2
A
vasopressin


δ-opioid
A
opioid


μ-opioid
A
opioid


k-opioid
A
opioid


D1
A
dopamine


D2
A
dopamine


D3
A
dopamine


H2
A
histamine


H4
A
histamine


α2aAR
A
A2-adrenoceptor


B4
A
bradykinin


B2
A
bradykinin


CCR2
A
chemokine


CCR5
A
chemokine


CXCR4
A
chemokine


CXCR2
A
chemokine


CXCR1
A
chemokine


CCK
A
cholecystokinin


LTB1
A
leukotriene


MT1
A
melatonin


MT2
A
melatonin


M2
A
muscarinic Achl


M3
A
muscarinic Achl


OT
A
oxytocin


SSTR5
A
somatostatin


SSTR1A
A
somatostatin


SSTR1B
A
somatostatin


SSTR1C
A
somatostatin


SSTR2A
A
somatostatin


GnRH
A
gonadotrophin


TRH
B
thyrotropin


GHSR1
A
ghrelin


IgGhepta
B


A1
A
adenosine


PACAP
B


PAR1
A
thrombin


AT1
A
angiotensin


Rhodopsin
A


Frizzled4


MC1
A
melacortin








































































EXAMPLES
Example1
Preparation of Cells Expressing Monomers and Homodimers of V2 Receptors, Fused with a Suicide Enzyme SNAPtag (ST) or CLIPtag (CT)
Reagent and Material Used:
OptiMEM (Invitrogen (51985-026)) Krebs-glucose: Krebs buffer+glucose 0.5 g/l FLAG-ST-V2 plasmid: plasmid bearing the sequence coding for a fusion protein comprising a membrane-addressing signal peptide T8, the FLAG epitope, the enzyme SNAPTAG and the V2 receptor. The sequence of this plasmid is SEQ ID No.4. FLAG-CT-V2 plasmid: plasmid bearing the sequence coding for a fusion protein comprising a membrane-addressing signal peptide T8, the FLAG epitope, the enzyme CLIPTAG and the V2 receptor. The sequence of this plasmid is identical to that of the FLAG-ST-V2 plasmid apart from the sequence coding for SNAPtag, which has been replaced with that coding for CLIPtag. A vector bearing the enzyme CLIP-tag is marketed by the company New England biolabbs (NEB), which also supplies its sequence.

Treatment of the Plates
50 μl of solution of poly-L-ornithine (0.01% solution, molecular weight 30,000-70,000 (SIGMA P4957)) was distributed in each well of a 96-well plate (Cellstar, black with black bottom) to promote adherence of the cells to the bottom of the well, and the plates were incubated for 30 min at 37° C.

Transfection
The following transfection mixture was then distributed in each well:
0.16 μg of plasmid FLAG-ST-V2+0.16 μg of plasmid FLAG-CT-V2 0.8 μl of Lipofectamine 2000 50 μl of OptiMEM medium
After incubation for 30 minutes, 100 μl of a suspension containing 100 000 cells COS7 was added to each well, then incubated for 24 hours at 37° C. in the presence of 5% CO 2 .

Example 2
Preparation of Cells Expressing Monomers of Receptors mGlu3, mGlu2, and Heterodimers of Receptors mGlu2-mGlu3
The same protocol as in example 1 was used for expression of heterodimers mGluR2-mGluR3, using the same plasmids as in this example but replacing the sequence of the V2 receptor with that of the mGlu2 or mGlu3 receptor. Thus, the plasmids FLAG-ST-mGluR2 and FLAG-ST-mGluR3 were used for expression of the dimers mGluR2-mGluR3, in which mGluR2 is fused to SNAPtag and mGluR3 is fused to CLIPtag.
Example 3
Cells Expressing the Dopamine D2 Receptor and the Delta Opioid Receptor
3.1 Reagents:
So-called complete medium: DMEM Glutamax™-L, 10% fetal calf serum, 1% MEM NEAA (Non-Essential Amino Acids), 1% Pen-Strep, 2 mM HEPES. Supplier: Gibco (Invitrogen).
Opti MEM Glutamax™-L marketed by Gibco.
Tag-Lite® buffer: marketed by Cisbio bioassays.
Tag-Lite® SNAP-Lumi4Tb: Substrate of the enzyme SNAP-Tag, marketed by Cisbio Bioassays. This reagent can be used here for labeling the receptor SNAPTag-Delta Opioid.
Tag-Lite® Halo-Lumi4Tb: Substrate of the enzyme Halo-Tag, marketed by Cisbio Bioassays. This reagent can be used here for labeling the receptor HaloTag-Dopamine D2.
Red antagonist of the dopamine D2 receptor: Ligand of the Dopamine D2 receptor (Spiperone derivative), coupled to a red acceptor fluorophore. Marketed by Cisbio (“ Opioid receptor red antagonist ”, Ref. L0002RED).
Red antagonist of the opioid receptor: Ligand of the Delta Opioid receptor (naltrexone derivative), coupled to a red acceptor fluorophore Marketed by Cisbio (“ Opioid receptor red antagonist ”, Ref. L0005RED).
Antagonists, Agonists, Inverse Agonists specific to the Dopamine D2 receptor: NAPS (antagonist) supplied by Columbia University, New York; Bromocriptine (partial agonist), Spiperone (antagonist), Haloperidol (inverse agonist), (S)-(−)-Sulpiride (inverse agonist) marketed by Tocris; PPHT (agonist) from Sigma. These six compounds are each taken up in a solution containing 100% of dimethylsulfoxide (DMSO, Sigma), except for the NAPS which is resolubilized in 10% DMSO and 90% water.
Antagonists, Agonists, Inverse Agonists specific to the Delta Opiold receptor: Endomorphin I (agonist) resolubilized in 100% H 2 O, Naltrindole (antagonist) taken up in 100% DMSO, SNC-162 (agonist) resolubilized in H 2 O+1 equivalent HCl. Naloxone (Antagonist) resolubilized in 90% H 2 O and 10% DMSO. These compounds are marketed by Tocris.
Flag-SNAP-Delta Opioid Plasmid; plasmid bearing the sequence coding for a fusion protein comprising a membrane-addressing signal peptide 18, the FLAG epitope, the enzyme SNAPTAG and the Delta Opioid receptor. The sequence of this plasmid is SEQ ID No.5.
Flag-Halo-Dopamine D2 Plasmid: plasmid bearing the sequence coding for a fusion protein comprising a membrane-addressing signal peptide T8, the FLAG epitope, the enzyme Halotag and the dopamine D2 receptor. The sequence of this mid is SEQ ID No.6.
3.2 Cell Cultures:
Adherent HEK293T/17 cells were cultured with 25 ml of complete culture medium, in Easy Flask T175 flasks (Nuns), at 37° C. under humid atmosphere at 5% CO 2 . The cells were detached from the flask, from which the culture medium had been removed beforehand, using 5 ml of cell dissociation buffer (Gibco). The density and the viability of the cells were evaluated using a Vi-Cell™-XR cell counter (Beckman Coulter).
3.3. Transient Transfection and Labeling:
50 μl of solution of poly-L-ornithine (0.01% solution, molecular weight 30,000-70,000 (SIGMA P4957)) was distributed in each well of a 96-well plate (Cellstar, black with black bottom) in order to promote adherence of the cells to the bottom of the well, and the plates were incubated for 20 min at 37° C.
The following transfection mixture was prepared, for each well:
48.5 μl of OptiMEM medium preheated to 37° C. 0.35 μg of Flag-SNAP-Delta Opioid plasmid+0.35 μg of Flag-Halo-Dopamine D2 plasmid 0.8 μl of Lipofectamine 2000

After vortexing and incubation for 30 minutes at room temperature, this mixture was deposited in each well of the plate, after aspiration of the poly-L-ornithine, and at a rate of 50 μl per well.
100 μL of a suspension of HEK293T cells at a concentration of 1 million/ml (prepared in 3.2) was then added to each well, i.e. 100 000 cells per well. The plate was then incubated for 24 h at 37° C. under humid atmosphere at 5% CO 2 .
After the 24 h of incubation, the medium in each well was aspirated, 100 μL of a solution of SNAP-Lumi4Tb or HALO-Lumi4Tb at 100 nM was then added to each well, to label the receptors with the fluorescent substrates, by reaction with the Snaptag or Halotag domains of the fusion proteins. The plate was then incubated at 37° C. for 1 h, then rinsed by four successive washings with 100 μl per well of Tag-Lite® buffer. Finally, 50 μl of this buffer was added to each well.
3.4. Determination of the Affinity of the Fluorescent Reference Ligands on the Delta Opioid—D2 Heterodimer
The affinity of the fluorescent reference ligands for the heterodimers was determined by incubating the cells at room temperature with increasing concentrations of fluorescent ligand. For each concentration of fluorescent ligand, the nonspecific binding signal is determined by adding an excess of nonfluorescent ligand (10 μM of NAPS for Dopamine D2 and 10 μM of Naltrindole for delta Opioid). The fluorescent and nonfluorescent ligands were diluted in Tag-lite buffer. 25 μl of nonfluorescent ligand or of Tag-lite buffer was added to the plates prepared in example 3.3, followed by addition of 25 μl of fluorescent ligand. The plates were then incubated at room temperature for 3 h before signal detection.
The signal was measured at 665 nm and 620 nm on a Rubystar reader (BMG Labtech). The HTRF ratio was then calculated by dividing the signal of the acceptor (665 nm) by that of the donor (620 nm) and multiplying this value by 10 000. The results were then analyzed on GraphPad Prism (GraphPad Software, Inc., San Diego, Calif.). The dissociation constants (Kd) of the fluorescent ligands were obtained from the saturation curves of the specific binding signal. The specific binding signal was obtained by subtracting the nonspecific HTRF ratio from the total HTRF ratio.
FIG. 8 corresponds to the dose-response curve obtained by measuring the signal emitted by cells whose D2 receptor has been labeled with HALO-Lumi4Tb, in the presence of increasing concentration of red antagonist of the opioid receptor. The Kd of the red antagonist of the opioid receptor for the Delta Opioid receptor implicated in a heterodimer is 4.57 nM.
FIG. 9 corresponds to the dose-response curve obtained by measuring the signal emitted by cells whose Delta Opioid receptor has been labeled with SNAP-Lumi4Tb, in the presence of increasing concentration of red antagonist of the dopamine D2 receptor. The Kd of the red antagonist of the D2 receptor for the D2 receptor implicated in a heterodimer is 1.44 nM.
3.5. Investigation of the Pharmacology of Various Compounds on the Heterodimers of Delta Opioid—D2 Receptors
Competitive tests between the fluorescent ligands at fixed concentrations (3 nM of the red antagonist of the dopamine D2 receptor or of the opioid receptor) and of the test compounds at increasing concentrations, enabled us to evaluate the affinity of these compounds for the heterodimers.
The fluorescent ligands and the test compounds were diluted in Tag-lite buffer. 25 μl of the test compound or of Tag-lite buffer was added to the plates prepared in example 3.3, followed by addition of 25 μl of fluorescent ligand. The plates were then incubated at room temperature for 3 h before signal detection.
The signal was measured at 665 nm and 620 nm on a Rubystar reader (BMG Labtech). The HTRF ratio was then calculated by dividing the signal of the acceptor (665 nm) by that of the donor (620 nm) and multiplying this value by 10 000. The results were then analyzed on GraphPad Prism (GraphPad Software, Inc., San Diego, Calif.). The values of the inhibition constants (Ki) of the compounds were obtained from the competitive tests using the equation of Cheng and Prusoff.
FIG. 10 shows the variation of the signal emitted by cells whose D2 receptor had been labeled with HALO-Lumi4Tb, in the presence of a fixed concentration of red antagonist of the opioid receptor, and of increasing concentration of various test compounds (Endomorphin 1, Naloxone, SNC-162 and Naltrindole). The curves obtained show that the test compounds compete with the fluorescent reference ligand and bind to the heterodimers. This figure also shows the Ki values calculated for each of the compounds tested.
FIG. 11 shows the variation of the signal emitted by cells whose Delta opioid receptor had been labeled with SNAP-Lumi4Tb, in the presence of a fixed concentration of red antagonist of the dopamine D2 receptor, and of increasing concentration of various test compounds (NAPS, PPHT, Bromocriptine, Spiperone, Haloperidol and Sulpiride). The curves obtained show that the test compounds compete with the fluorescent reference ligand and bind to the heterodimers. This figure also shows the Ki values calculated for each of the compounds tested.